Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   VY92_RS08225 Genome accession   NZ_CP058307
Coordinates   1706793..1707149 (+) Length   118 a.a.
NCBI ID   WP_035685388.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AVPG2015     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1701793..1712149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VY92_RS08205 (VY92_008210) - 1702659..1703927 (-) 1269 WP_035685622.1 AmpG family muropeptide MFS transporter -
  VY92_RS08210 (VY92_008215) galE 1703994..1705010 (-) 1017 WP_035685386.1 UDP-glucose 4-epimerase GalE -
  VY92_RS08215 (VY92_008220) - 1705046..1705186 (-) 141 WP_156127777.1 hypothetical protein -
  VY92_RS08220 (VY92_008225) - 1705217..1706530 (+) 1314 WP_017805051.1 NCS2 family permease -
  VY92_RS08225 (VY92_008230) comE1/comEA 1706793..1707149 (+) 357 WP_035685388.1 helix-hairpin-helix domain-containing protein Machinery gene
  VY92_RS08230 (VY92_008235) rdgB 1707287..1707883 (+) 597 WP_035685390.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  VY92_RS08235 (VY92_008240) hemW 1707883..1709037 (+) 1155 WP_035685394.1 radical SAM family heme chaperone HemW -
  VY92_RS08240 (VY92_008245) luxS 1709105..1709611 (-) 507 WP_035685396.1 S-ribosylhomocysteine lyase -
  VY92_RS08245 (VY92_008250) - 1709834..1710292 (-) 459 WP_035685398.1 YqaA family protein -
  VY92_RS08250 (VY92_008255) - 1710285..1710893 (-) 609 WP_035685399.1 sugar O-acetyltransferase -
  VY92_RS08255 (VY92_008260) - 1710894..1711496 (-) 603 WP_035685401.1 beta-phosphoglucomutase family hydrolase -
  VY92_RS08260 (VY92_008265) - 1711639..1712016 (+) 378 WP_017805060.1 hypothetical protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12796.70 Da        Isoelectric Point: 8.4831

>NTDB_id=463638 VY92_RS08225 WP_035685388.1 1706793..1707149(+) (comE1/comEA) [Avibacterium paragallinarum strain AVPG2015]
MKIKTILSSLILAITFIGSVYADETVNPPATTQVTDNKTIATTFIGEKLNINTASASEIQKALVGIGAKKAEAIVEYREQ
HGKFIAPEQLLEVKGIGKAIFEKNKDRIDLSSFNSNSQ

Nucleotide


Download         Length: 357 bp        

>NTDB_id=463638 VY92_RS08225 WP_035685388.1 1706793..1707149(+) (comE1/comEA) [Avibacterium paragallinarum strain AVPG2015]
ATGAAAATTAAGACGATTTTATCTTCTCTCATTTTGGCAATAACATTTATTGGTTCGGTTTATGCTGATGAAACAGTGAA
TCCACCAGCCACGACACAAGTGACGGATAATAAAACTATCGCCACCACATTTATTGGCGAAAAGCTCAATATTAATACGG
CAAGTGCAAGTGAAATTCAAAAAGCCTTAGTAGGCATTGGGGCGAAGAAAGCAGAAGCTATCGTGGAATATCGAGAACAA
CACGGTAAATTTATCGCACCAGAACAACTATTAGAAGTAAAGGGAATTGGAAAAGCGATTTTTGAAAAAAATAAAGATCG
CATAGATTTATCTTCATTTAATAGTAATAGCCAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(47-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

53.571

94.915

0.508
  comEA/comE1 Glaesserella parasuis strain SC1401

50

89.831

0.449
  comEA Vibrio cholerae C6706

41.441

94.068

0.39
  comEA Vibrio cholerae strain A1552

41.441

94.068

0.39