Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HHA26_RS00070 Genome accession   NZ_CP058301
Coordinates   11207..11683 (+) Length   158 a.a.
NCBI ID   WP_003013740.1    Uniprot ID   A0A0B6E6V2
Organism   Francisella tularensis subsp. holarctica strain 08T0013     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6207..16683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHA26_RS00035 (HHA26_00035) - 6630..6833 (-) 204 WP_003024316.1 hypothetical protein -
  HHA26_RS00040 (HHA26_00040) sppA 6907..7830 (+) 924 WP_003013655.1 signal peptide peptidase SppA -
  HHA26_RS00045 (HHA26_00045) - 7920..8459 (+) 540 WP_011457328.1 OmpH family outer membrane protein -
  HHA26_RS00050 (HHA26_00050) - 8595..9017 (+) 423 WP_003013699.1 rhodanese-like domain-containing protein -
  HHA26_RS00055 (HHA26_00055) secB 9045..9494 (+) 450 WP_003013731.1 protein-export chaperone SecB -
  HHA26_RS00060 (HHA26_00060) recA 9516..10595 (+) 1080 WP_003013734.1 recombinase RecA Machinery gene
  HHA26_RS00065 (HHA26_00065) - 10582..11034 (+) 453 WP_003013736.1 regulatory protein RecX -
  HHA26_RS00070 (HHA26_00070) ssb 11207..11683 (+) 477 WP_003013740.1 single-stranded DNA-binding protein Machinery gene
  HHA26_RS00075 (HHA26_00075) - 11789..12943 (+) 1155 WP_003013741.1 acetate/propionate family kinase -
  HHA26_RS00080 (HHA26_00080) pta 12953..15049 (+) 2097 WP_010030676.1 phosphate acetyltransferase -
  HHA26_RS09665 - 15064..15528 (+) 465 WP_003017565.1 aldehyde dehydrogenase family protein -
  HHA26_RS09670 - 15489..15956 (+) 468 WP_258561618.1 aldehyde dehydrogenase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17523.19 Da        Isoelectric Point: 5.7117

>NTDB_id=463583 HHA26_RS00070 WP_003013740.1 11207..11683(+) (ssb) [Francisella tularensis subsp. holarctica strain 08T0013]
MAKGTVNKVILLGRLGNDPEVRTTQNGTVVATLSIATNDGMGENITTEWHRVVIFGKSAEAIQRYANKGTQIFVEGRLRT
NKWQDKNGNMQYTTEVVASNFQFIGGGSQGGANNQNTPNFNQQPNNNFNQNHQQPSRQDNMPDFAEINSSNFDDDIPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=463583 HHA26_RS00070 WP_003013740.1 11207..11683(+) (ssb) [Francisella tularensis subsp. holarctica strain 08T0013]
ATGGCTAAAGGAACTGTAAATAAGGTTATTTTGCTAGGTAGATTGGGTAATGATCCAGAAGTTAGAACTACACAAAATGG
AACTGTCGTAGCAACTTTAAGTATCGCGACTAATGATGGTATGGGTGAGAATATAACTACAGAATGGCATAGAGTAGTTA
TATTTGGTAAATCTGCTGAAGCCATTCAAAGGTATGCAAATAAAGGTACACAAATTTTTGTCGAAGGTCGATTACGCACT
AATAAATGGCAAGATAAAAACGGTAATATGCAATATACAACTGAAGTAGTTGCGAGTAATTTCCAGTTTATCGGTGGTGG
TTCTCAAGGCGGAGCAAATAACCAAAATACGCCAAATTTTAATCAGCAACCAAATAATAATTTTAACCAAAATCATCAGC
AACCATCAAGACAAGATAATATGCCTGATTTTGCTGAAATTAACTCATCTAATTTTGATGATGATATTCCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B6E6V2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

43.169

100

0.5
  ssb Vibrio cholerae strain A1552

41.011

100

0.462
  ssb Neisseria meningitidis MC58

34.286

100

0.38
  ssb Neisseria gonorrhoeae MS11

34.286

100

0.38