Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   HX738_RS07145 Genome accession   NZ_CP058299
Coordinates   1412941..1413528 (-) Length   195 a.a.
NCBI ID   WP_032584555.1    Uniprot ID   -
Organism   Campylobacter jejuni strain A9a     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1407941..1418528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX738_RS07125 (HX738_07125) - 1408689..1409453 (+) 765 WP_052800369.1 TIGR02757 family protein -
  HX738_RS07130 (HX738_07130) - 1409457..1410221 (+) 765 WP_061099855.1 TSUP family transporter -
  HX738_RS07135 (HX738_07135) ctsF 1410214..1411395 (-) 1182 WP_032586873.1 type II secretion system F family protein Machinery gene
  HX738_RS07140 (HX738_07140) ctsE 1411392..1412951 (-) 1560 WP_032586875.1 GspE/PulE family protein Machinery gene
  HX738_RS07145 (HX738_07145) ctsX 1412941..1413528 (-) 588 WP_032584555.1 transformation system protein Machinery gene
  HX738_RS07150 (HX738_07150) ctsP 1413532..1414140 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  HX738_RS07155 (HX738_07155) ctsD 1414133..1415545 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  HX738_RS07160 (HX738_07160) ctsR 1415523..1415834 (-) 312 WP_177640572.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23433.52 Da        Isoelectric Point: 9.8479

>NTDB_id=463577 HX738_RS07145 WP_032584555.1 1412941..1413528(-) (ctsX) [Campylobacter jejuni strain A9a]
MQERIKELELRYKYFLLKRYLKYLFLIVLILVIAFCFFVIMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=463577 HX738_RS07145 WP_032584555.1 1412941..1413528(-) (ctsX) [Campylobacter jejuni strain A9a]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATATTTTTTACTTAAAAGATATTTAAAATATTTATTTTTAAT
TGTTTTAATCTTAGTAATAGCATTTTGTTTTTTTGTGATAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAGCATAAAAAGCATTTAGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGCAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGCGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

97.436

100

0.974