Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   HX738_RS07160 Genome accession   NZ_CP058299
Coordinates   1415523..1415834 (-) Length   103 a.a.
NCBI ID   WP_177640572.1    Uniprot ID   -
Organism   Campylobacter jejuni strain A9a     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1410523..1420834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX738_RS07140 (HX738_07140) ctsE 1411392..1412951 (-) 1560 WP_032586875.1 GspE/PulE family protein Machinery gene
  HX738_RS07145 (HX738_07145) ctsX 1412941..1413528 (-) 588 WP_032584555.1 transformation system protein Machinery gene
  HX738_RS07150 (HX738_07150) ctsP 1413532..1414140 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  HX738_RS07155 (HX738_07155) ctsD 1414133..1415545 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  HX738_RS07160 (HX738_07160) ctsR 1415523..1415834 (-) 312 WP_177640572.1 transformation system protein Machinery gene
  HX738_RS07165 (HX738_07165) nifJ 1415858..1419418 (-) 3561 WP_032586879.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  HX738_RS07170 (HX738_07170) - 1419511..1420152 (-) 642 WP_002872339.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12479.37 Da        Isoelectric Point: 6.4656

>NTDB_id=463580 HX738_RS07160 WP_177640572.1 1415523..1415834(-) (ctsR) [Campylobacter jejuni strain A9a]
MCFSTLFTQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=463580 HX738_RS07160 WP_177640572.1 1415523..1415834(-) (ctsR) [Campylobacter jejuni strain A9a]
TTGTGTTTTAGCACTTTGTTTACACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

98.058

100

0.981