Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   HX738_RS07150 Genome accession   NZ_CP058299
Coordinates   1413532..1414140 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni strain A9a     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1408532..1419140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX738_RS07125 (HX738_07125) - 1408689..1409453 (+) 765 WP_052800369.1 TIGR02757 family protein -
  HX738_RS07130 (HX738_07130) - 1409457..1410221 (+) 765 WP_061099855.1 TSUP family transporter -
  HX738_RS07135 (HX738_07135) ctsF 1410214..1411395 (-) 1182 WP_032586873.1 type II secretion system F family protein Machinery gene
  HX738_RS07140 (HX738_07140) ctsE 1411392..1412951 (-) 1560 WP_032586875.1 GspE/PulE family protein Machinery gene
  HX738_RS07145 (HX738_07145) ctsX 1412941..1413528 (-) 588 WP_032584555.1 transformation system protein Machinery gene
  HX738_RS07150 (HX738_07150) ctsP 1413532..1414140 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  HX738_RS07155 (HX738_07155) ctsD 1414133..1415545 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  HX738_RS07160 (HX738_07160) ctsR 1415523..1415834 (-) 312 WP_177640572.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=463578 HX738_RS07150 WP_002851464.1 1413532..1414140(-) (ctsP) [Campylobacter jejuni strain A9a]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=463578 HX738_RS07150 WP_002851464.1 1413532..1414140(-) (ctsP) [Campylobacter jejuni strain A9a]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGCAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995