Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   HX738_RS07135 Genome accession   NZ_CP058299
Coordinates   1410214..1411395 (-) Length   393 a.a.
NCBI ID   WP_032586873.1    Uniprot ID   -
Organism   Campylobacter jejuni strain A9a     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1405214..1416395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HX738_RS07105 (HX738_07105) - 1405758..1406099 (+) 342 WP_002784057.1 hypothetical protein -
  HX738_RS07110 (HX738_07110) flgM 1406162..1406359 (+) 198 WP_002872343.1 flagellar biosynthesis anti-sigma factor FlgM -
  HX738_RS07115 (HX738_07115) - 1406402..1406836 (+) 435 WP_177640571.1 flagellar protein FlgN -
  HX738_RS07120 (HX738_07120) flgK 1406846..1408672 (+) 1827 WP_052800370.1 flagellar hook-associated protein FlgK -
  HX738_RS07125 (HX738_07125) - 1408689..1409453 (+) 765 WP_052800369.1 TIGR02757 family protein -
  HX738_RS07130 (HX738_07130) - 1409457..1410221 (+) 765 WP_061099855.1 TSUP family transporter -
  HX738_RS07135 (HX738_07135) ctsF 1410214..1411395 (-) 1182 WP_032586873.1 type II secretion system F family protein Machinery gene
  HX738_RS07140 (HX738_07140) ctsE 1411392..1412951 (-) 1560 WP_032586875.1 GspE/PulE family protein Machinery gene
  HX738_RS07145 (HX738_07145) ctsX 1412941..1413528 (-) 588 WP_032584555.1 transformation system protein Machinery gene
  HX738_RS07150 (HX738_07150) ctsP 1413532..1414140 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  HX738_RS07155 (HX738_07155) ctsD 1414133..1415545 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  HX738_RS07160 (HX738_07160) ctsR 1415523..1415834 (-) 312 WP_177640572.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45744.36 Da        Isoelectric Point: 9.0938

>NTDB_id=463575 HX738_RS07135 WP_032586873.1 1410214..1411395(-) (ctsF) [Campylobacter jejuni strain A9a]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=463575 HX738_RS07135 WP_032586873.1 1410214..1411395(-) (ctsF) [Campylobacter jejuni strain A9a]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTGTCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCCAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGCGTTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTAATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAACTTAGCTCAGGGGTTAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.724

99.746

0.985