Detailed information NTG0463448

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HWU11_RS00220
• Genome accession: NZ_CP058285
• Coordinates: 39455..40591 (+)
• Length: 378 a.a.
• NCBI ID: WP_237008489.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain BT302
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 34455..45591

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HWU11_RS00185	panD	34894..35247 (+)	354	WP_120972089.1	aspartate 1-decarboxylase	-
HWU11_RS00190	-	35250..35552 (+)	303	WP_000347928.1	YbaB/EbfC family nucleoid-associated protein	-
HWU11_RS00195	-	35552..36556 (+)	1005	WP_237008908.1	PDZ domain-containing protein	-
HWU11_RS00200	comB6	36564..37619 (+)	1056	WP_237008486.1	P-type conjugative transfer protein TrbL	Machinery gene
HWU11_RS00205	comB7	37635..37748 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HWU11_RS00210	comB8	37745..38488 (+)	744	WP_237008487.1	type IV secretion system protein	Machinery gene
HWU11_RS00215	comB9	38488..39462 (+)	975	WP_237008488.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HWU11_RS00220	comB10	39455..40591 (+)	1137	WP_237008489.1	DNA type IV secretion system protein ComB10	Machinery gene
HWU11_RS00225	-	40661..42073 (+)	1413	WP_237008490.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HWU11_RS00230	gmd	42128..43273 (+)	1146	WP_237008491.1	GDP-mannose 4,6-dehydratase	-
HWU11_RS00235	-	43266..44198 (+)	933	WP_039082012.1	GDP-L-fucose synthase family protein	-
HWU11_RS07870	-	44187..44351 (-)	165	WP_336885782.1	hypothetical protein	-
HWU11_RS00245	-	44546..44962 (-)	417	WP_237008909.1	hypothetical protein	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42151.68 Da
• Isoelectric Point: 9.9312

>NTDB_id=463448 HWU11_RS00220 WP_237008489.1 39455..40591(+) (comB10) [Helicobacter pylori strain BT302]
MNKWLKGAIVFVGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTPAESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFTNPPIESQTKPTPPKKDFSSKQWDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=463448 HWU11_RS00220 WP_237008489.1 39455..40591(+) (comB10) [Helicobacter pylori strain BT302]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTAGGGGGTTTTGCAACGATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAGGATTACACCT
TCACTCAAAACCCACAGCCAACCCCTGCAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCACTCTAAAGAAGAAACTTTTACTAACCCTCCCATAGAGTCTCAAAC
AAAACCAACCCCCCCTAAAAAAGACTTTTCTTCAAAGCAATGGGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGCATTGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGCAAAGCTGTTTTAA
TCCCCAAAGGCTCTAAGGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCCTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTGTTGATTG
GAATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGTATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCTCCCATTGTGGT
GATTAGAGAGGGGAGTAGGGTATTCATTTCGCCTAATACTGACATCTTCTTCCCTATACCCAGAGAGAATGAAGTCATCG
CGGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.032	100	0.96