Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   HWU11_RS00215 Genome accession   NZ_CP058285
Coordinates   38488..39462 (+) Length   324 a.a.
NCBI ID   WP_237008488.1    Uniprot ID   -
Organism   Helicobacter pylori strain BT302     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 33488..44462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU11_RS00185 panD 34894..35247 (+) 354 WP_120972089.1 aspartate 1-decarboxylase -
  HWU11_RS00190 - 35250..35552 (+) 303 WP_000347928.1 YbaB/EbfC family nucleoid-associated protein -
  HWU11_RS00195 - 35552..36556 (+) 1005 WP_237008908.1 PDZ domain-containing protein -
  HWU11_RS00200 comB6 36564..37619 (+) 1056 WP_237008486.1 P-type conjugative transfer protein TrbL Machinery gene
  HWU11_RS00205 comB7 37635..37748 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  HWU11_RS00210 comB8 37745..38488 (+) 744 WP_237008487.1 type IV secretion system protein Machinery gene
  HWU11_RS00215 comB9 38488..39462 (+) 975 WP_237008488.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HWU11_RS00220 comB10 39455..40591 (+) 1137 WP_237008489.1 DNA type IV secretion system protein ComB10 Machinery gene
  HWU11_RS00225 - 40661..42073 (+) 1413 WP_237008490.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HWU11_RS00230 gmd 42128..43273 (+) 1146 WP_237008491.1 GDP-mannose 4,6-dehydratase -
  HWU11_RS00235 - 43266..44198 (+) 933 WP_039082012.1 GDP-L-fucose synthase family protein -
  HWU11_RS07870 - 44187..44351 (-) 165 WP_336885782.1 hypothetical protein -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 37519.11 Da        Isoelectric Point: 9.5582

>NTDB_id=463447 HWU11_RS00215 WP_237008488.1 38488..39462(+) (comB9) [Helicobacter pylori strain BT302]
MRKVLYALMGFLLAFSTLKADDFLEEANETAPTNLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFLKPQKENKENTLENAPTNNKPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYKALKSSQRKWYCLWACS
KKSKPSLMPKEIFNDKQFTYFKFDKRLALSKFPVVYKVVDGYDNPVNTRIVGDYIIAEDVSTKWTLRLGKDYLCIRFVKR
ARDE

Nucleotide


Download         Length: 975 bp        

>NTDB_id=463447 HWU11_RS00215 WP_237008488.1 38488..39462(+) (comB9) [Helicobacter pylori strain BT302]
ATGCGTAAGGTTTTATACGCTCTCATGGGCTTTTTGTTGGCTTTTAGCACTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAACGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTATTTTCAGGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGACGCAAAAATTTTAGAAAG
TAACGATCGCATTTTACTCATCAAGCCTTTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAGCGAGGGCAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTTTGAAGCCCCAAAAAGAAAATAAAGAAAATACCCTTGAAAACGCTCCCACAAACAACAAACC
CTTAAAAGAAGAAAAAGAAGAAACTAAAGAAAAAGAAGAAGAGACTATAACTATTGGCGATAACACCAATGCGATGAAAA
TCGTTAAAAAAGACATTCAAAAAGGCTATAAGGCTCTAAAAAGCTCTCAAAGGAAATGGTATTGTTTATGGGCTTGTTCT
AAAAAGTCCAAACCCTCTTTGATGCCTAAAGAAATTTTTAACGACAAACAATTCACTTATTTCAAATTTGACAAAAGATT
AGCGCTCTCTAAATTCCCGGTGGTTTATAAGGTCGTTGATGGCTATGATAACCCGGTGAATACAAGGATTGTGGGCGATT
ACATTATCGCTGAAGACGTTTCTACTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGCATCCGTTTTGTCAAAAGG
GCTAGAGATGAATAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

95.399

100

0.96