Detailed information NTG0463444

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HWU11_RS00200
• Genome accession: NZ_CP058285
• Coordinates: 36564..37619 (+)
• Length: 351 a.a.
• NCBI ID: WP_237008486.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain BT302
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31564..42619

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HWU11_RS00170	-	31960..32373 (+)	414	WP_001023008.1	universal stress protein	-
HWU11_RS00175	-	32404..32679 (+)	276	WP_115806136.1	ATP-dependent Clp protease adaptor ClpS	-
HWU11_RS00180	-	32679..34904 (+)	2226	WP_237008485.1	AAA family ATPase	-
HWU11_RS00185	panD	34894..35247 (+)	354	WP_120972089.1	aspartate 1-decarboxylase	-
HWU11_RS00190	-	35250..35552 (+)	303	WP_000347928.1	YbaB/EbfC family nucleoid-associated protein	-
HWU11_RS00195	-	35552..36556 (+)	1005	WP_237008908.1	PDZ domain-containing protein	-
HWU11_RS00200	comB6	36564..37619 (+)	1056	WP_237008486.1	P-type conjugative transfer protein TrbL	Machinery gene
HWU11_RS00205	comB7	37635..37748 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HWU11_RS00210	comB8	37745..38488 (+)	744	WP_237008487.1	type IV secretion system protein	Machinery gene
HWU11_RS00215	comB9	38488..39462 (+)	975	WP_237008488.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HWU11_RS00220	comB10	39455..40591 (+)	1137	WP_237008489.1	DNA type IV secretion system protein ComB10	Machinery gene
HWU11_RS00225	-	40661..42073 (+)	1413	WP_237008490.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39672.63 Da
• Isoelectric Point: 8.8165

>NTDB_id=463444 HWU11_RS00200 WP_237008486.1 36564..37619(+) (comB6) [Helicobacter pylori strain BT302]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPLHFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSVLQVLFLSVL
FAIIILVYLEVHVWCSLGALFLAFGFFKAWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=463444 HWU11_RS00200 WP_237008486.1 36564..37619(+) (comB6) [Helicobacter pylori strain BT302]
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTTGCTCTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCTTTGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCTCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCACTTTCTTTAGATTTTATCTTTAATCATGGTTTCTATGCCCTTAGCT
TTATTAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCGTTTTGCAAGTGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
TAAAGCCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAGTGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.436	100	0.974