Detailed information NTG0463425

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HWU15_RS00215
• Genome accession: NZ_CP058281
• Coordinates: 39226..40362 (+)
• Length: 378 a.a.
• NCBI ID: WP_237015523.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hk711
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 34226..45362

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HWU15_RS00180	panD	34683..35033 (+)	351	WP_120935459.1	aspartate 1-decarboxylase	-
HWU15_RS00185	-	35044..35337 (+)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
HWU15_RS00190	-	35337..36332 (+)	996	WP_237016014.1	PDZ domain-containing protein	-
HWU15_RS00195	comB6	36340..37395 (+)	1056	WP_237016015.1	P-type conjugative transfer protein TrbL	Machinery gene
HWU15_RS00200	comB7	37433..37525 (+)	93	WP_237015520.1	comB7 lipoprotein	Machinery gene
HWU15_RS00205	comB8	37522..38259 (+)	738	WP_237015521.1	type IV secretion system protein	Machinery gene
HWU15_RS00210	comB9	38259..39233 (+)	975	WP_237015522.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HWU15_RS00215	comB10	39226..40362 (+)	1137	WP_237015523.1	DNA type IV secretion system protein ComB10	Machinery gene
HWU15_RS00220	-	40433..41845 (+)	1413	WP_237015524.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HWU15_RS00225	gmd	41856..43001 (+)	1146	WP_237015525.1	GDP-mannose 4,6-dehydratase	-
HWU15_RS00230	-	42994..43926 (+)	933	WP_220840357.1	GDP-L-fucose synthase family protein	-
HWU15_RS00235	hypE	44163..45161 (-)	999	WP_237015526.1	hydrogenase expression/formation protein HypE	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42273.80 Da
• Isoelectric Point: 9.9312

>NTDB_id=463425 HWU15_RS00215 WP_237015523.1 39226..40362(+) (comB10) [Helicobacter pylori strain Hk711]
MNKWLKGALVFVGGFATIVTISLIYHQKPKAPLNNQQNLLNDDEVKYPLQDYTFTQNPQPTHTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTNSPIEPKTNTTPPKKDFSLKQWDLLASRIIPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDTATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=463425 HWU15_RS00215 WP_237015523.1 39226..40362(+) (comB10) [Helicobacter pylori strain Hk711]
ATGAATAAGTGGCTTAAGGGGGCACTTGTTTTTGTGGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACAAAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTCACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAACTCTCCTATAGAACCAAAAAC
AAACACAACCCCCCCTAAAAAAGATTTTTCTCTAAAACAATGGGATTTACTAGCTTCTCGCATCATCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACACCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGACAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCACAAGTGGAGAGCGATATTTTTGCTCACATGGGTAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCTACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGATAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTTTTCATTTCGCCCAATACTGACATTTTTTTCCCTATACCTAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	94.709	100	0.947