Detailed information NTG0463421

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HWU15_RS00195
• Genome accession: NZ_CP058281
• Coordinates: 36340..37395 (+)
• Length: 351 a.a.
• NCBI ID: WP_237016015.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hk711
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31340..42395

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HWU15_RS00165	-	31758..32171 (+)	414	WP_001023008.1	universal stress protein	-
HWU15_RS00170	-	32199..32474 (+)	276	WP_000784917.1	ATP-dependent Clp protease adaptor ClpS	-
HWU15_RS00175	-	32474..34693 (+)	2220	WP_237015519.1	AAA family ATPase	-
HWU15_RS00180	panD	34683..35033 (+)	351	WP_120935459.1	aspartate 1-decarboxylase	-
HWU15_RS00185	-	35044..35337 (+)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
HWU15_RS00190	-	35337..36332 (+)	996	WP_237016014.1	PDZ domain-containing protein	-
HWU15_RS00195	comB6	36340..37395 (+)	1056	WP_237016015.1	P-type conjugative transfer protein TrbL	Machinery gene
HWU15_RS00200	comB7	37433..37525 (+)	93	WP_237015520.1	comB7 lipoprotein	Machinery gene
HWU15_RS00205	comB8	37522..38259 (+)	738	WP_237015521.1	type IV secretion system protein	Machinery gene
HWU15_RS00210	comB9	38259..39233 (+)	975	WP_237015522.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HWU15_RS00215	comB10	39226..40362 (+)	1137	WP_237015523.1	DNA type IV secretion system protein ComB10	Machinery gene
HWU15_RS00220	-	40433..41845 (+)	1413	WP_237015524.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39853.85 Da
• Isoelectric Point: 8.8165

>NTDB_id=463421 HWU15_RS00195 WP_237016015.1 36340..37395(+) (comB6) [Helicobacter pylori strain Hk711]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALMEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMIVQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVVCLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSTRESASKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=463421 HWU15_RS00195 WP_237016015.1 36340..37395(+) (comB6) [Helicobacter pylori strain Hk711]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTTTTCAGCGCTAGCGCGCTAATGGAAGCGTTATTGTTTGTGGGTTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGTGCAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGTGTGTCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGATGCGCATATGCAAGAAAAACAAGATTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTACAAGAGAAAGCGCCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.721	100	0.977