Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   HWU15_RS00210 Genome accession   NZ_CP058281
Coordinates   38259..39233 (+) Length   324 a.a.
NCBI ID   WP_237015522.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hk711     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 33259..44233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU15_RS00180 panD 34683..35033 (+) 351 WP_120935459.1 aspartate 1-decarboxylase -
  HWU15_RS00185 - 35044..35337 (+) 294 WP_000347923.1 YbaB/EbfC family nucleoid-associated protein -
  HWU15_RS00190 - 35337..36332 (+) 996 WP_237016014.1 PDZ domain-containing protein -
  HWU15_RS00195 comB6 36340..37395 (+) 1056 WP_237016015.1 P-type conjugative transfer protein TrbL Machinery gene
  HWU15_RS00200 comB7 37433..37525 (+) 93 WP_237015520.1 comB7 lipoprotein Machinery gene
  HWU15_RS00205 comB8 37522..38259 (+) 738 WP_237015521.1 type IV secretion system protein Machinery gene
  HWU15_RS00210 comB9 38259..39233 (+) 975 WP_237015522.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HWU15_RS00215 comB10 39226..40362 (+) 1137 WP_237015523.1 DNA type IV secretion system protein ComB10 Machinery gene
  HWU15_RS00220 - 40433..41845 (+) 1413 WP_237015524.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HWU15_RS00225 gmd 41856..43001 (+) 1146 WP_237015525.1 GDP-mannose 4,6-dehydratase -
  HWU15_RS00230 - 42994..43926 (+) 933 WP_220840357.1 GDP-L-fucose synthase family protein -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 37461.20 Da        Isoelectric Point: 9.3412

>NTDB_id=463424 HWU15_RS00210 WP_237015522.1 38259..39233(+) (comB9) [Helicobacter pylori strain Hk711]
MRKVLYAFVGFLLVFSALKADDFLEEANETAPTNLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQIKENALENTLEKAPTNNKPLKEEKEETKEEETIIIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLWICS
KKSKLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKK
GKDE

Nucleotide


Download         Length: 975 bp        

>NTDB_id=463424 HWU15_RS00210 WP_237015522.1 38259..39233(+) (comB9) [Helicobacter pylori strain Hk711]
ATGCGTAAGGTTTTATACGCTTTTGTGGGCTTTTTGTTGGTTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCCACGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGTTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAGCCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCTAACGCTTTTATGAAGCCACAAATTAAAGAAAATGCCCTTGAAAATACCCTTGAAAAGGCTCCCACAAACAA
CAAACCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAAACCATAATTATTGGCGATAACACGAATGCAATGAAAA
TCGTTAAAAAAGACATTCAAAAAGGCTATAGGGCGTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGTGGATTTGTTCT
AAAAAATCCAAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATT
AGCGCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAACACTAGGATTGTGGGCGATT
ACATTATCGCTGAAGATGTTTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAG
GGTAAAGATGAATAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

91.718

100

0.923