Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HHA30_RS09200 Genome accession   NZ_CP058276
Coordinates   1839862..1840338 (+) Length   158 a.a.
NCBI ID   WP_003013740.1    Uniprot ID   A0A0B6E6V2
Organism   Francisella tularensis subsp. tularensis isolate FSC237     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1834862..1845338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHA30_RS09165 (HHA30_09165) - 1835286..1835489 (-) 204 WP_003024316.1 hypothetical protein -
  HHA30_RS09170 (HHA30_09170) sppA 1835563..1836486 (+) 924 WP_003022733.1 signal peptide peptidase SppA -
  HHA30_RS09175 (HHA30_09175) - 1836576..1837115 (+) 540 WP_003029937.1 OmpH family outer membrane protein -
  HHA30_RS09180 (HHA30_09180) - 1837251..1837673 (+) 423 WP_003013699.1 rhodanese-like domain-containing protein -
  HHA30_RS09185 (HHA30_09185) secB 1837700..1838149 (+) 450 WP_003013731.1 protein-export chaperone SecB -
  HHA30_RS09190 (HHA30_09190) recA 1838171..1839250 (+) 1080 WP_003013734.1 recombinase RecA Machinery gene
  HHA30_RS09195 (HHA30_09195) - 1839237..1839689 (+) 453 WP_003022737.1 regulatory protein RecX -
  HHA30_RS09200 (HHA30_09200) ssb 1839862..1840338 (+) 477 WP_003013740.1 single-stranded DNA-binding protein Machinery gene
  HHA30_RS09205 (HHA30_09205) - 1840444..1841598 (+) 1155 WP_003022739.1 acetate/propionate family kinase -
  HHA30_RS09210 (HHA30_09210) pta 1841608..1843704 (+) 2097 WP_003022741.1 phosphate acetyltransferase -
  HHA30_RS09215 (HHA30_09215) - 1843719..1844638 (+) 920 Protein_1838 aldehyde dehydrogenase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17523.19 Da        Isoelectric Point: 5.7117

>NTDB_id=463403 HHA30_RS09200 WP_003013740.1 1839862..1840338(+) (ssb) [Francisella tularensis subsp. tularensis isolate FSC237]
MAKGTVNKVILLGRLGNDPEVRTTQNGTVVATLSIATNDGMGENITTEWHRVVIFGKSAEAIQRYANKGTQIFVEGRLRT
NKWQDKNGNMQYTTEVVASNFQFIGGGSQGGANNQNTPNFNQQPNNNFNQNHQQPSRQDNMPDFAEINSSNFDDDIPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=463403 HHA30_RS09200 WP_003013740.1 1839862..1840338(+) (ssb) [Francisella tularensis subsp. tularensis isolate FSC237]
ATGGCTAAAGGAACTGTAAATAAGGTTATTTTGCTAGGTAGATTGGGTAATGATCCAGAAGTTAGAACTACACAAAATGG
AACTGTCGTAGCAACTTTAAGTATCGCGACTAATGATGGTATGGGTGAGAATATAACTACAGAATGGCATAGAGTAGTTA
TATTTGGTAAATCTGCTGAAGCCATTCAAAGGTATGCAAATAAAGGTACACAAATTTTTGTCGAAGGTCGATTACGCACT
AATAAATGGCAAGATAAAAACGGTAATATGCAATATACAACTGAAGTAGTTGCGAGTAATTTCCAGTTTATCGGTGGTGG
TTCTCAAGGCGGAGCAAATAACCAAAATACGCCAAACTTTAATCAGCAACCAAATAATAATTTTAACCAAAATCATCAGC
AACCATCAAGACAAGATAATATGCCTGATTTTGCTGAAATTAACTCATCTAATTTTGATGATGATATTCCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B6E6V2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

43.169

100

0.5
  ssb Vibrio cholerae strain A1552

41.011

100

0.462
  ssb Neisseria meningitidis MC58

34.286

100

0.38
  ssb Neisseria gonorrhoeae MS11

34.286

100

0.38