Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HHA28_RS00070 Genome accession   NZ_CP058275
Coordinates   11206..11682 (+) Length   158 a.a.
NCBI ID   WP_003013740.1    Uniprot ID   A0A0B6E6V2
Organism   Francisella tularensis subsp. holarctica strain 12T0052     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6206..16682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHA28_RS00035 (HHA28_00035) - 6630..6833 (-) 204 WP_003024316.1 hypothetical protein -
  HHA28_RS00040 (HHA28_00040) sppA 6907..7830 (+) 924 WP_003013655.1 signal peptide peptidase SppA -
  HHA28_RS00045 (HHA28_00045) - 7920..8459 (+) 540 WP_011457328.1 OmpH family outer membrane protein -
  HHA28_RS00050 (HHA28_00050) - 8595..9017 (+) 423 WP_003013699.1 rhodanese-like domain-containing protein -
  HHA28_RS00055 (HHA28_00055) secB 9044..9493 (+) 450 WP_003013731.1 protein-export chaperone SecB -
  HHA28_RS00060 (HHA28_00060) recA 9515..10594 (+) 1080 WP_003013734.1 recombinase RecA Machinery gene
  HHA28_RS00065 (HHA28_00065) - 10581..11033 (+) 453 WP_010030679.1 regulatory protein RecX -
  HHA28_RS00070 (HHA28_00070) ssb 11206..11682 (+) 477 WP_003013740.1 single-stranded DNA-binding protein Machinery gene
  HHA28_RS00075 (HHA28_00075) - 11788..12942 (+) 1155 WP_003013741.1 acetate/propionate family kinase -
  HHA28_RS00080 (HHA28_00080) pta 12952..15048 (+) 2097 WP_010030676.1 phosphate acetyltransferase -
  HHA28_RS09645 - 15063..15527 (+) 465 WP_003017565.1 aldehyde dehydrogenase family protein -
  HHA28_RS09650 - 15488..15982 (+) 495 WP_253253422.1 aldehyde dehydrogenase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17523.19 Da        Isoelectric Point: 5.7117

>NTDB_id=463388 HHA28_RS00070 WP_003013740.1 11206..11682(+) (ssb) [Francisella tularensis subsp. holarctica strain 12T0052]
MAKGTVNKVILLGRLGNDPEVRTTQNGTVVATLSIATNDGMGENITTEWHRVVIFGKSAEAIQRYANKGTQIFVEGRLRT
NKWQDKNGNMQYTTEVVASNFQFIGGGSQGGANNQNTPNFNQQPNNNFNQNHQQPSRQDNMPDFAEINSSNFDDDIPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=463388 HHA28_RS00070 WP_003013740.1 11206..11682(+) (ssb) [Francisella tularensis subsp. holarctica strain 12T0052]
ATGGCTAAAGGAACTGTAAATAAGGTTATTTTGCTAGGTAGATTGGGTAATGATCCAGAAGTTAGAACTACACAAAATGG
AACTGTCGTAGCAACTTTAAGTATCGCGACTAATGATGGTATGGGTGAGAATATAACTACAGAATGGCATAGAGTAGTTA
TATTTGGTAAATCTGCTGAAGCCATTCAAAGGTATGCAAATAAAGGTACACAAATTTTTGTCGAAGGTCGATTACGCACT
AATAAATGGCAAGATAAAAACGGTAATATGCAATATACAACTGAAGTAGTTGCGAGTAATTTCCAGTTTATCGGTGGTGG
TTCTCAAGGCGGAGCAAATAACCAAAATACGCCAAATTTTAATCAGCAACCAAATAATAATTTTAACCAAAATCATCAGC
AACCATCAAGACAAGATAATATGCCTGATTTTGCTGAAATTAACTCATCTAATTTTGATGATGATATTCCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B6E6V2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

43.169

100

0.5
  ssb Vibrio cholerae strain A1552

41.011

100

0.462
  ssb Neisseria meningitidis MC58

34.286

100

0.38
  ssb Neisseria gonorrhoeae MS11

34.286

100

0.38