Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CQZ96_RS12655 Genome accession   NZ_CP058272
Coordinates   2705356..2705964 (-) Length   202 a.a.
NCBI ID   WP_105713882.1    Uniprot ID   -
Organism   Acinetobacter sp. MYb10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2700356..2710964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQZ96_RS12625 (CQZ96_012655) ycaC 2701116..2701742 (+) 627 WP_105713879.1 isochorismate family cysteine hydrolase YcaC -
  CQZ96_RS12630 (CQZ96_012660) - 2701874..2702797 (+) 924 WP_004718559.1 LysR substrate-binding domain-containing protein -
  CQZ96_RS12635 (CQZ96_012665) ahpC 2702869..2703432 (-) 564 WP_004718560.1 alkyl hydroperoxide reductase subunit C -
  CQZ96_RS12640 (CQZ96_012670) - 2703653..2703988 (+) 336 WP_105713880.1 hypothetical protein -
  CQZ96_RS12645 (CQZ96_012675) - 2704022..2704657 (-) 636 WP_105713881.1 TetR/AcrR family transcriptional regulator -
  CQZ96_RS12650 (CQZ96_012680) - 2704807..2705271 (+) 465 WP_056517210.1 hotdog fold domain-containing protein -
  CQZ96_RS12655 (CQZ96_012685) ssb 2705356..2705964 (-) 609 WP_105713882.1 single-stranded DNA-binding protein Machinery gene
  CQZ96_RS12660 (CQZ96_012690) - 2706016..2707380 (-) 1365 WP_105713883.1 MFS transporter -
  CQZ96_RS12665 (CQZ96_012695) - 2707520..2708602 (-) 1083 WP_171066888.1 DUF475 domain-containing protein -
  CQZ96_RS12670 (CQZ96_012700) tenA 2708837..2709508 (+) 672 WP_004818427.1 thiaminase II -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21908.61 Da        Isoelectric Point: 6.4829

>NTDB_id=463359 CQZ96_RS12655 WP_105713882.1 2705356..2705964(-) (ssb) [Acinetobacter sp. MYb10]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKNSGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDNNRQQGEGAAADNGGYNQPRFNNNQQGGFNNNQGGGGYANQGNQGGGYGNA
NPQGGYGNGGNNVNQGFQSPKPAATPSAPTAAPADLDDDLPF

Nucleotide


Download         Length: 609 bp        

>NTDB_id=463359 CQZ96_RS12655 WP_105713882.1 2705356..2705964(-) (ssb) [Acinetobacter sp. MYb10]
ATGCGTGGTGTAAATAAAGTTATTTTAGTTGGTACTTTAGGTCGTGATCCTGAGACTAAAACTTTCCCAAATGGGGGTTC
TCTCACTCAATTTTCAATTGCGACAAGTGAATCTTGGACAGACAAAAATTCCGGTGAAAGAAAAGAACAAACGGAATGGC
ATCGTATTGTATTGCACAACCGTTTAGGTGAGATTGCACAGCAGTATTTACGTAAAGGTTCAAAAGTTTATATTGAAGGT
TCTTTACGTACCCGTCAGTGGACGGATCAAAATGGTCAAGAGCGCTATACCACTGAAATTCGTGGCGAACAAATGCAGAT
GCTTGATAACAACCGTCAACAAGGTGAAGGCGCTGCTGCTGACAATGGTGGTTATAACCAACCACGTTTCAATAACAACC
AGCAAGGTGGTTTTAACAACAACCAAGGCGGTGGCGGTTATGCGAATCAAGGTAATCAAGGTGGTGGTTACGGCAATGCC
AATCCACAAGGTGGCTATGGCAATGGCGGAAACAATGTAAACCAAGGTTTTCAATCGCCTAAACCTGCAGCTACACCATC
AGCACCTACTGCTGCCCCTGCGGATTTAGATGATGACTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.51

100

0.5
  ssb Vibrio cholerae strain A1552

42.927

100

0.436
  ssb Neisseria meningitidis MC58

38.462

100

0.396
  ssb Neisseria gonorrhoeae MS11

38

99.01

0.376