Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   HW271_RS01685 Genome accession   NZ_CP058258
Coordinates   359197..361155 (+) Length   652 a.a.
NCBI ID   WP_178894612.1    Uniprot ID   A0A7H8Z8C1
Organism   Streptococcus sp. oral taxon 061 strain F0704     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 354197..366155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW271_RS01675 (HW271_01675) - 355290..356900 (+) 1611 WP_178894610.1 alpha-glucosidase -
  HW271_RS01680 (HW271_01680) amiA 357068..359035 (+) 1968 WP_178894611.1 peptide ABC transporter substrate-binding protein Regulator
  HW271_RS01685 (HW271_01685) amiA3 359197..361155 (+) 1959 WP_178894612.1 peptide ABC transporter substrate-binding protein Regulator
  HW271_RS01690 (HW271_01690) - 361351..362799 (+) 1449 WP_178894613.1 LCP family protein -
  HW271_RS01695 (HW271_01695) cps4B 362801..363532 (+) 732 WP_178894614.1 capsular polysaccharide biosynthesis protein Cps4B -
  HW271_RS01700 (HW271_01700) - 363541..364233 (+) 693 WP_178894615.1 capsular polysaccharide biosynthesis protein -
  HW271_RS01705 (HW271_01705) - 364244..364936 (+) 693 WP_178894616.1 tyrosine-protein kinase -
  HW271_RS01710 (HW271_01710) - 364988..365623 (+) 636 WP_178894617.1 sugar transferase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72654.54 Da        Isoelectric Point: 4.7089

>NTDB_id=463207 HW271_RS01685 WP_178894612.1 359197..361155(+) (amiA3) [Streptococcus sp. oral taxon 061 strain F0704]
MKLKKRLIGAGLTLAAAVLLTACGKSASDAKTYSSTFGADPTTFNYILDYSGDNTNVITNLVDGLLENDNYGNLIPALAE
DWSVSKDGLTYTYKLRQDAKWFTADGEEYAPIKAQDFVTGIKYAADNKSQALDLIQNSIKGLDDYVTGANTDFSNVGVKA
VDDYTVQYTLTRPEPFWNSKTTNSILFPVNEEFLTSKGKEFGELKPDSILYSGPYLLKEFTSKSSLEYMKNPHYYDQEKV
TIERVKLAYVDGSDQDMTIRNFESGAYSSAGVYPNSSNFAKTKEKYKDNIVYSLQDATSWYYNFNVNRQTYNHTAKTSDE
QKQATQAAILNKNFRQAINFAIDRTAYSAQSNGEEAAKNTLRNTLVPPTFVQVGDKTFGETVASKLVNYGTQWSNMNLED
AQDGYFNKEKAQAQFAEAKKELEAQGVTFPIHLDLPVDQVNKTLLPKIHSLKQSVESTLGAENVVIDVVQISTEDYANAT
FQAPTTADHDYDLNLDGWSADYQDPSTYLNPFNAEDGFYLKILGLDPSKDTDKITSIGLDQYTQKLKAADAENTDVAKRY
ENYADAQAWLIDSSLLLPVNSNGGGASVTRVTPFTRAYSLVGIKGTGSNYKYMRLQTEVVTTAQFDEAKAKWEQERKNSV
EKSQKEFESHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=463207 HW271_RS01685 WP_178894612.1 359197..361155(+) (amiA3) [Streptococcus sp. oral taxon 061 strain F0704]
ATGAAACTCAAAAAACGACTGATTGGAGCGGGGTTGACGCTTGCCGCGGCGGTCTTATTGACAGCGTGTGGGAAGTCAGC
ATCAGATGCTAAAACCTACTCGTCAACATTTGGTGCCGATCCAACAACCTTCAACTACATTTTGGATTATTCTGGTGACA
ATACTAATGTTATTACCAACTTGGTAGATGGTTTGCTTGAAAATGACAATTATGGAAATCTCATTCCTGCTCTTGCAGAA
GATTGGAGTGTTTCAAAGGATGGTTTGACTTACACTTATAAACTTCGTCAAGATGCTAAATGGTTCACGGCTGACGGGGA
AGAATACGCCCCAATTAAAGCACAAGATTTCGTCACAGGTATCAAGTATGCAGCGGATAACAAGAGTCAAGCGCTTGATT
TGATTCAGAACTCAATCAAGGGATTAGATGATTATGTGACAGGCGCAAATACTGACTTTTCAAATGTTGGTGTGAAAGCT
GTAGATGATTACACTGTCCAATATACTTTGACACGTCCAGAACCATTCTGGAACTCTAAAACAACCAATAGTATCCTCTT
TCCAGTCAATGAAGAATTCTTGACTTCTAAAGGTAAAGAATTTGGGGAATTAAAACCAGATAGCATTCTCTACAGTGGTC
CTTATTTGTTAAAAGAATTCACATCAAAATCATCACTCGAGTACATGAAGAACCCTCATTACTATGACCAAGAAAAAGTG
ACGATTGAAAGAGTTAAGTTGGCTTATGTTGATGGTTCGGATCAAGATATGACGATTCGTAACTTTGAAAGTGGTGCTTA
CTCATCTGCAGGAGTCTATCCAAACAGTTCAAACTTTGCTAAGACAAAGGAAAAATACAAGGACAATATCGTCTATAGCT
TACAGGATGCGACTTCTTGGTACTATAATTTTAACGTTAATCGCCAAACATACAATCATACAGCTAAGACTAGCGATGAG
CAAAAACAAGCTACCCAAGCTGCGATTTTAAATAAAAATTTCCGTCAAGCAATCAACTTTGCCATTGACCGTACAGCTTA
TTCGGCTCAGTCTAATGGAGAAGAAGCAGCTAAAAATACTCTTCGTAACACACTTGTGCCACCAACTTTCGTGCAAGTAG
GTGACAAGACTTTTGGTGAGACAGTCGCATCTAAGTTGGTAAACTATGGTACACAGTGGTCAAATATGAATCTTGAAGAC
GCCCAGGACGGCTACTTCAATAAAGAAAAAGCACAAGCTCAGTTTGCAGAGGCTAAAAAAGAATTAGAAGCACAAGGTGT
GACCTTCCCAATTCATTTGGACTTGCCTGTAGACCAAGTTAACAAAACCTTGCTTCCAAAGATTCATTCGCTTAAACAAT
CTGTCGAATCAACTCTTGGGGCAGAAAATGTAGTGATTGATGTCGTTCAAATTTCAACAGAAGACTATGCCAACGCGACA
TTCCAAGCGCCAACCACAGCTGATCATGACTATGATTTAAACTTGGATGGTTGGTCTGCAGACTACCAAGATCCATCAAC
TTATCTCAATCCTTTCAATGCTGAGGATGGATTCTATCTCAAGATTTTAGGACTTGATCCAAGCAAGGATACTGATAAGA
TTACAAGTATCGGATTGGACCAATATACTCAAAAATTGAAAGCGGCAGATGCAGAAAATACAGACGTAGCCAAACGTTAT
GAAAATTATGCAGACGCACAAGCTTGGCTGATTGATAGTTCGCTATTGCTCCCTGTAAATTCAAATGGTGGTGGGGCTTC
AGTAACACGTGTGACACCATTTACACGAGCTTACTCACTTGTCGGAATCAAAGGTACTGGAAGTAACTACAAGTACATGA
GATTGCAAACTGAAGTAGTAACAACTGCTCAATTTGACGAAGCTAAAGCCAAATGGGAACAAGAACGTAAAAATTCTGTC
GAAAAGAGTCAAAAAGAATTCGAAAGTCACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8Z8C1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

51.368

100

0.518
  amiA3 Streptococcus thermophilus LMG 18311

50.912

100

0.514
  amiA Streptococcus salivarius strain HSISS4

50.989

100

0.514