Detailed information NTG0463069

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HWU18_RS00220
• Genome accession: NZ_CP058252
• Coordinates: 38622..39758 (+)
• Length: 378 a.a.
• NCBI ID: WP_237004378.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain NP05-124
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 33622..44758

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HWU18_RS00185	panD	34088..34438 (+)	351	WP_000142282.1	aspartate 1-decarboxylase	-
HWU18_RS00190	-	34449..34742 (+)	294	WP_000347921.1	YbaB/EbfC family nucleoid-associated protein	-
HWU18_RS00195	-	34742..35737 (+)	996	WP_237004375.1	PDZ domain-containing protein	-
HWU18_RS00200	comB6	35746..36801 (+)	1056	WP_237004376.1	P-type conjugative transfer protein TrbL	Machinery gene
HWU18_RS00205	comB7	36817..36930 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HWU18_RS00210	comB8	36927..37664 (+)	738	WP_140500962.1	type IV secretion system protein	Machinery gene
HWU18_RS00215	comB9	37664..38629 (+)	966	WP_237004377.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HWU18_RS00220	comB10	38622..39758 (+)	1137	WP_237004378.1	DNA type IV secretion system protein ComB10	Machinery gene
HWU18_RS00225	-	39828..41246 (+)	1419	WP_237004379.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HWU18_RS00230	gmd	41256..42401 (+)	1146	WP_237004380.1	GDP-mannose 4,6-dehydratase	-
HWU18_RS00235	-	42394..43326 (+)	933	WP_237004381.1	GDP-L-fucose synthase family protein	-
HWU18_RS07840	-	43351..43473 (-)	123	WP_268744387.1	hypothetical protein	-
HWU18_RS00240	hypE	43652..44650 (-)	999	WP_025275458.1	hydrogenase expression/formation protein HypE	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42108.69 Da
• Isoelectric Point: 9.9924

>NTDB_id=463069 HWU18_RS00220 WP_237004378.1 38622..39758(+) (comB10) [Helicobacter pylori strain NP05-124]
MNKWLKGAIVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQKAPTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFTNPPIDSKANTTPPKKDFSSKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=463069 HWU18_RS00220 WP_237004378.1 38622..39758(+) (comB10) [Helicobacter pylori strain NP05-124]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTAGGGGGTTTTGCAACGATTATAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCTAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGAAAGCTCCTACAGAAAGCTCCAAAGACGCTACTATCAAAGCCTTACAAGAACAGCTTAAAGCC
GCTTTAAAAGCCCTAAATTCCAAAGAAATGAACCATTCTAAAGAAGAAACTTTTACTAACCCTCCCATAGATTCAAAAGC
AAACACAACCCCTCCTAAAAAAGACTTCTCTTCAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTCTCATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTTATTGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCCTAGATATTGTATGGAGT
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGAGCAGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	95.767	100	0.958