Detailed information NTG0463065

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HWU18_RS00200
• Genome accession: NZ_CP058252
• Coordinates: 35746..36801 (+)
• Length: 351 a.a.
• NCBI ID: WP_237004376.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain NP05-124
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 30746..41801

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HWU18_RS00170	-	31162..31575 (+)	414	WP_001023008.1	universal stress protein	-
HWU18_RS00175	-	31598..31873 (+)	276	WP_237004373.1	ATP-dependent Clp protease adaptor ClpS	-
HWU18_RS00180	-	31873..34098 (+)	2226	WP_237004374.1	AAA family ATPase	-
HWU18_RS00185	panD	34088..34438 (+)	351	WP_000142282.1	aspartate 1-decarboxylase	-
HWU18_RS00190	-	34449..34742 (+)	294	WP_000347921.1	YbaB/EbfC family nucleoid-associated protein	-
HWU18_RS00195	-	34742..35737 (+)	996	WP_237004375.1	PDZ domain-containing protein	-
HWU18_RS00200	comB6	35746..36801 (+)	1056	WP_237004376.1	P-type conjugative transfer protein TrbL	Machinery gene
HWU18_RS00205	comB7	36817..36930 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HWU18_RS00210	comB8	36927..37664 (+)	738	WP_140500962.1	type IV secretion system protein	Machinery gene
HWU18_RS00215	comB9	37664..38629 (+)	966	WP_237004377.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HWU18_RS00220	comB10	38622..39758 (+)	1137	WP_237004378.1	DNA type IV secretion system protein ComB10	Machinery gene
HWU18_RS00225	-	39828..41246 (+)	1419	WP_237004379.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39741.67 Da
• Isoelectric Point: 9.0462

>NTDB_id=463065 HWU18_RS00200 WP_237004376.1 35746..36801(+) (comB6) [Helicobacter pylori strain NP05-124]
MNHNAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSVSALTEALLFVGFFALFNY
ALKNPLHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVMACLKKCFALGFYKPLLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFVIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSRSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=463065 HWU18_RS00200 WP_237004376.1 35746..36801(+) (comB6) [Helicobacter pylori strain NP05-124]
ATGAACCATAACGCTTATGAGATCATTCTTTCTTGGTTCATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGCT
TGAAGGAACAGAATTTCTTCAGTGTTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCTTTGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAACCATGGTTTTTATGCCCTTAGCT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGTATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTACTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTAATGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTCTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCACATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTGTCATAGGCGTGCCTTTTTTCATTAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTCAATTCCTTACAATACATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTAGGAGCGGAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (43-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.011	100	0.96