Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HWU18_RS00210 Genome accession   NZ_CP058252
Coordinates   36927..37664 (+) Length   245 a.a.
NCBI ID   WP_140500962.1    Uniprot ID   -
Organism   Helicobacter pylori strain NP05-124     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 31927..42664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU18_RS00185 panD 34088..34438 (+) 351 WP_000142282.1 aspartate 1-decarboxylase -
  HWU18_RS00190 - 34449..34742 (+) 294 WP_000347921.1 YbaB/EbfC family nucleoid-associated protein -
  HWU18_RS00195 - 34742..35737 (+) 996 WP_237004375.1 PDZ domain-containing protein -
  HWU18_RS00200 comB6 35746..36801 (+) 1056 WP_237004376.1 P-type conjugative transfer protein TrbL Machinery gene
  HWU18_RS00205 comB7 36817..36930 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  HWU18_RS00210 comB8 36927..37664 (+) 738 WP_140500962.1 type IV secretion system protein Machinery gene
  HWU18_RS00215 comB9 37664..38629 (+) 966 WP_237004377.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HWU18_RS00220 comB10 38622..39758 (+) 1137 WP_237004378.1 DNA type IV secretion system protein ComB10 Machinery gene
  HWU18_RS00225 - 39828..41246 (+) 1419 WP_237004379.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HWU18_RS00230 gmd 41256..42401 (+) 1146 WP_237004380.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28544.77 Da        Isoelectric Point: 8.9546

>NTDB_id=463067 HWU18_RS00210 WP_140500962.1 36927..37664(+) (comB8) [Helicobacter pylori strain NP05-124]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
TNRGD

Nucleotide


Download         Length: 738 bp        

>NTDB_id=463067 HWU18_RS00210 WP_140500962.1 36927..37664(+) (comB8) [Helicobacter pylori strain NP05-124]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTCAGACTGGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTATTTTAGCGATCGTGTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATCAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCGGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCCAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
ACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.166

100

0.98