Detailed information NTG0463026

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HWI84_RS00215
• Genome accession: NZ_CP058250
• Coordinates: 36814..37950 (+)
• Length: 378 a.a.
• NCBI ID: WP_237013147.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain AL02
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31814..42950

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HWI84_RS00180	panD	32281..32631 (+)	351	WP_187847004.1	aspartate 1-decarboxylase	-
HWI84_RS00185	-	32642..32935 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
HWI84_RS00190	-	32935..33930 (+)	996	WP_237013583.1	PDZ domain-containing protein	-
HWI84_RS00195	comB6	33938..34993 (+)	1056	WP_237013584.1	P-type conjugative transfer protein TrbL	Machinery gene
HWI84_RS00200	comB7	35009..35122 (+)	114	WP_001217868.1	hypothetical protein	Machinery gene
HWI84_RS00205	comB8	35119..35862 (+)	744	WP_237013145.1	type IV secretion system protein	Machinery gene
HWI84_RS00210	comB9	35862..36821 (+)	960	WP_237013146.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HWI84_RS00215	comB10	36814..37950 (+)	1137	WP_237013147.1	DNA type IV secretion system protein ComB10	Machinery gene
HWI84_RS00220	-	38017..39432 (+)	1416	WP_237013148.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HWI84_RS00225	gmd	39443..40588 (+)	1146	WP_180503157.1	GDP-mannose 4,6-dehydratase	-
HWI84_RS00230	-	40581..41513 (+)	933	WP_015085307.1	GDP-L-fucose synthase family protein	-
HWI84_RS00235	-	41584..41880 (-)	297	WP_237013585.1	hypothetical protein	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42231.85 Da
• Isoelectric Point: 9.9637

>NTDB_id=463026 HWI84_RS00215 WP_237013147.1 36814..37950(+) (comB10) [Helicobacter pylori strain AL02]
MNKWLKGTLVFAGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTHTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPIDLKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDTATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=463026 HWI84_RS00215 WP_237013147.1 36814..37950(+) (comB10) [Helicobacter pylori strain AL02]
ATGAATAAGTGGCTTAAGGGAACACTTGTTTTTGCAGGAGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCTAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTCACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCTAAAGAAATGAACTATTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATAGACTTAAAAAC
AAACACAACCCCTCCTAAAAAAGATTTTTCTCTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACACCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGATATTAAAGGTTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTCTCTACGCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCTACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGATAAGAGCAAAATCGCTCCTATTGTGGT
AATTAGAGAGGGGAGCAGGGTCTTCATTTCGCCCAATACTGACATTTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.825	100	0.968