Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HWI84_RS00205 Genome accession   NZ_CP058250
Coordinates   35119..35862 (+) Length   247 a.a.
NCBI ID   WP_237013145.1    Uniprot ID   -
Organism   Helicobacter pylori strain AL02     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 30119..40862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWI84_RS00180 panD 32281..32631 (+) 351 WP_187847004.1 aspartate 1-decarboxylase -
  HWI84_RS00185 - 32642..32935 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  HWI84_RS00190 - 32935..33930 (+) 996 WP_237013583.1 PDZ domain-containing protein -
  HWI84_RS00195 comB6 33938..34993 (+) 1056 WP_237013584.1 P-type conjugative transfer protein TrbL Machinery gene
  HWI84_RS00200 comB7 35009..35122 (+) 114 WP_001217868.1 hypothetical protein Machinery gene
  HWI84_RS00205 comB8 35119..35862 (+) 744 WP_237013145.1 type IV secretion system protein Machinery gene
  HWI84_RS00210 comB9 35862..36821 (+) 960 WP_237013146.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HWI84_RS00215 comB10 36814..37950 (+) 1137 WP_237013147.1 DNA type IV secretion system protein ComB10 Machinery gene
  HWI84_RS00220 - 38017..39432 (+) 1416 WP_237013148.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HWI84_RS00225 gmd 39443..40588 (+) 1146 WP_180503157.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28655.96 Da        Isoelectric Point: 9.2839

>NTDB_id=463024 HWI84_RS00205 WP_237013145.1 35119..35862(+) (comB8) [Helicobacter pylori strain AL02]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVSDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISLLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTKNSIY
AQSHLEREVHIVNIAIFQQDNNPIASVSIAAKLMNENKLVYEKRYKIALSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=463024 HWI84_RS00205 WP_237013145.1 35119..35862(+) (comB8) [Helicobacter pylori strain AL02]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAGTGATTTGGACATGCAAAGCGTGTTCAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGTTTGATGAGTTTTATCGCTCTTATCTTAGCGATCGTTTTAATCAGTCTTTTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAAGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGGGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGTTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACGAAAAACAGCATTTAT
GCACAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTTTCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCCGCTAAACTCATGAATGAAAACAAACTGGTGTATGAAAAGCGTTATAAAATCGCGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGTTTTAAAATCACTCGCTACAGCATCACTGAAATC
GCGCCAACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.571

100

0.976