Detailed information NTG0463022

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HWI84_RS00195
• Genome accession: NZ_CP058250
• Coordinates: 33938..34993 (+)
• Length: 351 a.a.
• NCBI ID: WP_237013584.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain AL02
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 28938..39993

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HWI84_RS00165	-	29350..29763 (+)	414	WP_001023008.1	universal stress protein	-
HWI84_RS00170	-	29794..30069 (+)	276	WP_015085297.1	ATP-dependent Clp protease adaptor ClpS	-
HWI84_RS00175	-	30069..32291 (+)	2223	WP_237013144.1	AAA family ATPase	-
HWI84_RS00180	panD	32281..32631 (+)	351	WP_187847004.1	aspartate 1-decarboxylase	-
HWI84_RS00185	-	32642..32935 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
HWI84_RS00190	-	32935..33930 (+)	996	WP_237013583.1	PDZ domain-containing protein	-
HWI84_RS00195	comB6	33938..34993 (+)	1056	WP_237013584.1	P-type conjugative transfer protein TrbL	Machinery gene
HWI84_RS00200	comB7	35009..35122 (+)	114	WP_001217868.1	hypothetical protein	Machinery gene
HWI84_RS00205	comB8	35119..35862 (+)	744	WP_237013145.1	type IV secretion system protein	Machinery gene
HWI84_RS00210	comB9	35862..36821 (+)	960	WP_237013146.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HWI84_RS00215	comB10	36814..37950 (+)	1137	WP_237013147.1	DNA type IV secretion system protein ComB10	Machinery gene
HWI84_RS00220	-	38017..39432 (+)	1416	WP_237013148.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39912.88 Da
• Isoelectric Point: 8.5806

>NTDB_id=463022 HWI84_RS00195 WP_237013584.1 33938..34993(+) (comB6) [Helicobacter pylori strain AL02]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALMEALWFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVVCLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHVQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSFKETYKLATHLSANLSQNALNSLQYITTPPASSSVSSSMSESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=463022 HWI84_RS00195 WP_237013584.1 33938..34993(+) (comB6) [Helicobacter pylori strain AL02]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTTTTCAGCGCTAGCGCGCTAATGGAAGCGTTATGGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATTGCGCAGAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGTGTGTTTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGATGCGCATGTGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CTTTAAAGAAACTTACAAACTCGCTACCCATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTGCAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGCGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.721	100	0.977