Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   HWI84_RS00210 Genome accession   NZ_CP058250
Coordinates   35862..36821 (+) Length   319 a.a.
NCBI ID   WP_237013146.1    Uniprot ID   -
Organism   Helicobacter pylori strain AL02     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 30862..41821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWI84_RS00180 panD 32281..32631 (+) 351 WP_187847004.1 aspartate 1-decarboxylase -
  HWI84_RS00185 - 32642..32935 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  HWI84_RS00190 - 32935..33930 (+) 996 WP_237013583.1 PDZ domain-containing protein -
  HWI84_RS00195 comB6 33938..34993 (+) 1056 WP_237013584.1 P-type conjugative transfer protein TrbL Machinery gene
  HWI84_RS00200 comB7 35009..35122 (+) 114 WP_001217868.1 hypothetical protein Machinery gene
  HWI84_RS00205 comB8 35119..35862 (+) 744 WP_237013145.1 type IV secretion system protein Machinery gene
  HWI84_RS00210 comB9 35862..36821 (+) 960 WP_237013146.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HWI84_RS00215 comB10 36814..37950 (+) 1137 WP_237013147.1 DNA type IV secretion system protein ComB10 Machinery gene
  HWI84_RS00220 - 38017..39432 (+) 1416 WP_237013148.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HWI84_RS00225 gmd 39443..40588 (+) 1146 WP_180503157.1 GDP-mannose 4,6-dehydratase -
  HWI84_RS00230 - 40581..41513 (+) 933 WP_015085307.1 GDP-L-fucose synthase family protein -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36829.39 Da        Isoelectric Point: 9.3499

>NTDB_id=463025 HWI84_RS00210 WP_237013146.1 35862..36821(+) (comB9) [Helicobacter pylori strain AL02]
MRKVLYALVGFLLAFSALKADDFLEEANQTAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNVSVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQIQENTLENTPTNNKPLKEEKEEKEEEIITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLWICSKKSKL
SLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFTKKGKDE

Nucleotide


Download         Length: 960 bp        

>NTDB_id=463025 HWI84_RS00210 WP_237013146.1 35862..36821(+) (comB9) [Helicobacter pylori strain AL02]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACCAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAGAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATGTCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGTTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCACAAATTCAAGAAAATACCCTTGAAAATACCCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAAAAGAAGAAGAGATTATAACCATTGGCGATAACACGAATGCAATGAAAATCGTTAAAAAAGACA
TTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGTGGATTTGTTCTAAAAAATCCAAACTC
TCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAAATT
CCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCCGAAG
ATGTTTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGTATCCGTTTTACCAAAAAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

92.025

100

0.94