Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HA399_RS16425 Genome accession   NZ_CP058244
Coordinates   3971751..3972407 (-) Length   218 a.a.
NCBI ID   WP_131432841.1    Uniprot ID   -
Organism   Cobetia sp. UIB-001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3966751..3977407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HA399_RS16410 (HA399_16450) - 3967073..3967834 (-) 762 WP_348473006.1 lysophospholipid acyltransferase family protein -
  HA399_RS16415 (HA399_16455) - 3967853..3968737 (-) 885 WP_404325530.1 sugar nucleotide-binding protein -
  HA399_RS16420 (HA399_16460) - 3968800..3971307 (-) 2508 WP_404325531.1 EAL domain-containing protein -
  HA399_RS16425 (HA399_16465) ssb 3971751..3972407 (-) 657 WP_131432841.1 single-stranded DNA-binding protein Machinery gene
  HA399_RS16430 (HA399_16470) - 3972495..3973910 (-) 1416 WP_404325532.1 MFS transporter -
  HA399_RS16435 (HA399_16475) uvrA 3974118..3976997 (+) 2880 WP_404325533.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23556.55 Da        Isoelectric Point: 5.2339

>NTDB_id=463015 HA399_RS16425 WP_131432841.1 3971751..3972407(-) (ssb) [Cobetia sp. UIB-001]
MARGVNKVILIGNLGQDPEVRFTPSGSAVCNLNLATTDTWNDRQSGQRQERTEWHRVVMFNKLAEVAQQYVKKGSRLYIE
GRLQTRKWQDQNGNDRYSTEIVANDMQMLDTRGEGGGGNFAGGRPQQAPQQGGQQPAAAPQQGGQFGGQQPAPQQGGQFG
GQQPAPQQGGQFGGQQPAPQQGNNFGGQQPAQQNNSQNNNFGAPPAGSFDDFDDEIPF

Nucleotide


Download         Length: 657 bp        

>NTDB_id=463015 HA399_RS16425 WP_131432841.1 3971751..3972407(-) (ssb) [Cobetia sp. UIB-001]
ATGGCTCGTGGCGTAAACAAGGTCATTCTGATCGGTAATCTCGGTCAAGACCCGGAAGTTCGCTTCACCCCGTCCGGTAG
TGCGGTGTGCAACCTGAACCTCGCGACGACGGACACCTGGAATGATCGCCAGAGCGGTCAGCGTCAGGAACGTACCGAAT
GGCACCGTGTGGTGATGTTCAACAAGCTGGCTGAAGTGGCCCAGCAATACGTCAAGAAAGGCTCACGCCTGTATATCGAA
GGTCGCCTGCAGACGCGCAAGTGGCAGGATCAGAACGGCAATGACCGTTACAGCACCGAAATCGTGGCCAACGACATGCA
GATGCTGGATACGCGTGGTGAAGGTGGCGGCGGCAACTTCGCTGGTGGTCGCCCGCAGCAGGCGCCTCAGCAGGGCGGCC
AGCAACCGGCCGCAGCCCCCCAGCAGGGTGGCCAGTTCGGTGGTCAGCAGCCGGCCCCGCAGCAAGGTGGCCAGTTCGGT
GGTCAGCAGCCGGCCCCTCAGCAAGGCGGTCAGTTCGGTGGTCAGCAGCCGGCCCCTCAGCAGGGCAACAACTTCGGTGG
CCAGCAGCCTGCGCAGCAGAACAACTCCCAGAACAACAATTTCGGTGCGCCGCCCGCGGGCAGCTTCGATGATTTCGATG
ATGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.091

100

0.495
  ssb Glaesserella parasuis strain SC1401

44.545

100

0.45
  ssb Neisseria meningitidis MC58

43.056

99.083

0.427
  ssb Neisseria gonorrhoeae MS11

42.791

98.624

0.422