Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HW370_RS23295 Genome accession   NZ_CP058222
Coordinates   4795273..4795809 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain CFT073     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4790273..4800809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW370_RS23275 (HW370_23090) soxR 4792002..4792466 (-) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -
  HW370_RS23280 (HW370_23095) soxS 4792552..4792875 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HW370_RS23285 (HW370_23100) pdeC 4792911..4794464 (-) 1554 WP_001327775.1 c-di-GMP phosphodiesterase PdeC -
  HW370_RS23290 (HW370_23105) yjcB 4794893..4795174 (+) 282 WP_001304710.1 YjcB family protein -
  HW370_RS23295 (HW370_23110) ssb 4795273..4795809 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HW370_RS23300 (HW370_23115) uvrA 4796064..4798886 (+) 2823 WP_000357764.1 excinuclease ABC subunit UvrA -
  HW370_RS23305 (HW370_23120) yjbR 4798921..4799277 (-) 357 WP_000155661.1 MmcQ/YjbR family DNA-binding protein -
  HW370_RS23310 (HW370_23125) yjbQ 4799281..4799697 (-) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HW370_RS23315 (HW370_23130) aphA 4799808..4800521 (-) 714 WP_001226933.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=462809 HW370_RS23295 WP_000168305.1 4795273..4795809(-) (ssb) [Escherichia coli strain CFT073]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=462809 HW370_RS23295 WP_000168305.1 4795273..4795809(-) (ssb) [Escherichia coli strain CFT073]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489