Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HW371_RS22715 Genome accession   NZ_CP058220
Coordinates   4689684..4690220 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain 83972     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4684684..4695220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW371_RS22695 (HW371_22510) soxR 4686413..4686877 (-) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -
  HW371_RS22700 (HW371_22515) soxS 4686963..4687286 (+) 324 WP_000019354.1 superoxide response transcriptional regulator SoxS -
  HW371_RS22705 (HW371_22520) pdeC 4687322..4688875 (-) 1554 WP_001327775.1 c-di-GMP phosphodiesterase PdeC -
  HW371_RS22710 (HW371_22525) yjcB 4689304..4689585 (+) 282 WP_001304710.1 YjcB family protein -
  HW371_RS22715 (HW371_22530) ssb 4689684..4690220 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HW371_RS22720 (HW371_22535) uvrA 4690475..4693297 (+) 2823 WP_000357764.1 excinuclease ABC subunit UvrA -
  HW371_RS22725 (HW371_22540) - 4693332..4693628 (-) 297 WP_000155662.1 MmcQ/YjbR family DNA-binding protein -
  HW371_RS22730 (HW371_22545) yjbQ 4693632..4694048 (-) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HW371_RS22735 (HW371_22550) aphA 4694159..4694872 (-) 714 WP_001226933.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=462787 HW371_RS22715 WP_000168305.1 4689684..4690220(-) (ssb) [Escherichia coli strain 83972]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=462787 HW371_RS22715 WP_000168305.1 4689684..4690220(-) (ssb) [Escherichia coli strain 83972]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489