Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HW532_RS02350 Genome accession   NZ_CP058214
Coordinates   495978..496463 (-) Length   161 a.a.
NCBI ID   WP_213162884.1    Uniprot ID   A0A7S8C1I7
Organism   Kaustia mangrovi strain R1DC25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 490978..501463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW532_RS02330 (HW532_02325) - 493093..493635 (-) 543 WP_213162880.1 nucleotidyltransferase domain-containing protein -
  HW532_RS02335 (HW532_02330) - 493565..494383 (-) 819 WP_213162881.1 exonuclease -
  HW532_RS02340 (HW532_02335) - 494452..494829 (-) 378 WP_213162882.1 hypothetical protein -
  HW532_RS02345 (HW532_02340) - 494948..495889 (+) 942 WP_213162883.1 cation diffusion facilitator family transporter -
  HW532_RS02350 (HW532_02345) ssb 495978..496463 (-) 486 WP_213162884.1 single-stranded DNA-binding protein Machinery gene
  HW532_RS02355 (HW532_02350) uvrA 496833..499742 (+) 2910 WP_213162885.1 excinuclease ABC subunit UvrA -
  HW532_RS22320 - 499928..500053 (-) 126 WP_281397148.1 hypothetical protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17853.66 Da        Isoelectric Point: 5.0791

>NTDB_id=462664 HW532_RS02350 WP_213162884.1 495978..496463(-) (ssb) [Kaustia mangrovi strain R1DC25]
MAGSVNKVILVGNLGADPEVRHTQDGRPIVNLRVATSETWRDKNSGERRERTEWHRVVIFSEGLCRIAEQYLKKGSKIYL
EGQLQTRKWEDQSGQERYTTEVVLQGFNSTLTMLDGRGGGSDEGMGASRGGGDFGQSGPLDQQSSRGRSSFSEELDDEVP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=462664 HW532_RS02350 WP_213162884.1 495978..496463(-) (ssb) [Kaustia mangrovi strain R1DC25]
ATGGCGGGATCGGTCAACAAGGTCATTCTGGTCGGCAATCTGGGCGCCGACCCGGAGGTCCGGCACACGCAGGACGGCCG
CCCCATCGTCAATCTGCGCGTGGCCACGTCGGAGACCTGGCGCGACAAGAACTCGGGCGAGCGGCGCGAGCGCACCGAAT
GGCATCGTGTGGTGATCTTCAGCGAGGGCCTTTGCCGGATTGCCGAGCAATATCTGAAGAAGGGCTCCAAGATCTATCTG
GAAGGCCAGCTCCAGACCCGGAAATGGGAAGACCAGTCCGGCCAGGAGCGCTATACGACCGAGGTCGTTCTTCAGGGCTT
CAATTCCACGCTGACCATGCTCGACGGCCGCGGCGGCGGGTCGGACGAGGGCATGGGCGCCTCGCGCGGCGGCGGCGATT
TCGGCCAGTCCGGCCCGCTCGACCAGCAGTCCTCGCGCGGCCGCTCCAGCTTCTCCGAGGAGCTCGACGACGAGGTGCCG
TTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S8C1I7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.555

100

0.522
  ssb Glaesserella parasuis strain SC1401

56.818

81.988

0.466
  ssb Neisseria gonorrhoeae MS11

40.223

100

0.447
  ssb Neisseria meningitidis MC58

39.665

100

0.441