Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HV018_RS13020 | Genome accession | NZ_CP058207 |
| Coordinates | 2732517..2733032 (+) | Length | 171 a.a. |
| NCBI ID | WP_000168264.1 | Uniprot ID | A0A7L5X6G7 |
| Organism | Escherichia marmotae strain RHB42-C09 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2715206..2737999 | 2732517..2733032 | within | 0 |
Gene organization within MGE regions
Location: 2715206..2737999
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV018_RS12845 (HV018_12815) | - | 2716224..2716457 (+) | 234 | WP_001663509.1 | YlcI/YnfO family protein | - |
| HV018_RS12850 (HV018_12820) | - | 2716514..2716924 (+) | 411 | WP_000079508.1 | DUF1398 domain-containing protein | - |
| HV018_RS12855 (HV018_12825) | - | 2717211..2717468 (-) | 258 | WP_001279720.1 | hypothetical protein | - |
| HV018_RS12860 (HV018_12830) | - | 2717465..2717911 (-) | 447 | WP_000562925.1 | KilA-N domain-containing protein | - |
| HV018_RS12865 (HV018_12835) | - | 2718164..2718622 (-) | 459 | WP_021557591.1 | lysis protein | - |
| HV018_RS12870 (HV018_12840) | rrrD | 2718619..2719116 (-) | 498 | WP_181237448.1 | lysozyme RrrD | - |
| HV018_RS12875 (HV018_12845) | - | 2719094..2719297 (-) | 204 | WP_000286100.1 | phage holin family protein | - |
| HV018_RS12885 (HV018_12850) | - | 2719733..2720356 (-) | 624 | WP_001235461.1 | antitermination protein | - |
| HV018_RS12890 (HV018_12855) | - | 2720353..2721018 (-) | 666 | WP_181236749.1 | serine/threonine protein phosphatase | - |
| HV018_RS12895 (HV018_12860) | - | 2720996..2721202 (-) | 207 | WP_000144614.1 | phage NinH family protein | - |
| HV018_RS12900 (HV018_12865) | - | 2721199..2721810 (-) | 612 | WP_061090471.1 | recombination protein NinG | - |
| HV018_RS12905 (HV018_12870) | - | 2721803..2721979 (-) | 177 | WP_181236751.1 | protein NinF | - |
| HV018_RS12910 (HV018_12875) | - | 2721972..2722331 (-) | 360 | WP_181236753.1 | phage protein NinX family protein | - |
| HV018_RS12915 (HV018_12880) | - | 2722334..2722510 (-) | 177 | WP_001254220.1 | NinE family protein | - |
| HV018_RS12920 (HV018_12885) | - | 2722507..2722917 (-) | 411 | WP_113975586.1 | recombination protein NinB | - |
| HV018_RS12925 (HV018_12890) | - | 2722920..2723234 (-) | 315 | WP_016063115.1 | hypothetical protein | - |
| HV018_RS12930 (HV018_12895) | - | 2723252..2723458 (-) | 207 | WP_000229811.1 | hypothetical protein | - |
| HV018_RS12935 (HV018_12900) | - | 2723531..2724907 (-) | 1377 | WP_181236755.1 | replicative DNA helicase | - |
| HV018_RS12940 (HV018_12905) | - | 2724904..2725725 (-) | 822 | WP_023241434.1 | replication protein | - |
| HV018_RS12945 (HV018_12910) | - | 2725712..2725873 (-) | 162 | WP_000166961.1 | hypothetical protein | - |
| HV018_RS12950 (HV018_12915) | - | 2725906..2726202 (-) | 297 | WP_000442612.1 | CII family transcriptional regulator | - |
| HV018_RS12955 (HV018_12920) | - | 2726344..2726559 (-) | 216 | WP_000067727.1 | helix-turn-helix transcriptional regulator | - |
| HV018_RS12960 (HV018_12925) | - | 2726634..2727329 (+) | 696 | WP_001302016.1 | LexA family protein | - |
| HV018_RS12965 (HV018_12930) | - | 2727831..2728352 (+) | 522 | WP_001130059.1 | hypothetical protein | - |
| HV018_RS12970 (HV018_12935) | - | 2728921..2729103 (+) | 183 | WP_000438343.1 | hypothetical protein | - |
| HV018_RS12975 (HV018_12940) | - | 2729081..2729353 (+) | 273 | WP_000088203.1 | hypothetical protein | - |
| HV018_RS12980 (HV018_12945) | - | 2729370..2729951 (-) | 582 | WP_001066172.1 | super-infection exclusion protein B | - |
| HV018_RS12990 (HV018_12955) | - | 2730424..2730624 (+) | 201 | WP_024239864.1 | antirestriction Ral family protein | - |
| HV018_RS12995 (HV018_12960) | - | 2730683..2731132 (+) | 450 | WP_000392424.1 | hypothetical protein | - |
| HV018_RS13000 (HV018_12965) | - | 2731369..2731509 (+) | 141 | WP_001198858.1 | protease FtsH-inhibitory lysogeny factor CIII | - |
| HV018_RS13005 (HV018_12970) | kil | 2731502..2731615 (+) | 114 | WP_015674621.1 | host cell division inhibitory peptide Kil | - |
| HV018_RS13010 (HV018_12975) | - | 2731612..2731800 (+) | 189 | WP_000613346.1 | hypothetical protein | - |
| HV018_RS13015 (HV018_12980) | - | 2731809..2732516 (+) | 708 | WP_000365278.1 | Rad52/Rad22 family DNA repair protein | - |
| HV018_RS13020 (HV018_12985) | ssb | 2732517..2733032 (+) | 516 | WP_000168264.1 | single-stranded DNA-binding protein | Machinery gene |
| HV018_RS13025 (HV018_12990) | - | 2733041..2733589 (+) | 549 | WP_001016186.1 | 3'-5' exonuclease | - |
| HV018_RS13030 (HV018_12995) | - | 2733606..2733899 (+) | 294 | WP_069024933.1 | phage anti-RecBCD protein | - |
| HV018_RS13035 (HV018_13000) | - | 2733910..2734077 (+) | 168 | WP_016242508.1 | DUF2737 family protein | - |
| HV018_RS13040 (HV018_13005) | - | 2734074..2734646 (+) | 573 | Protein_2582 | ead/Ea22-like family protein | - |
| HV018_RS13045 (HV018_13010) | - | 2734792..2735028 (+) | 237 | WP_000212569.1 | hypothetical protein | - |
| HV018_RS22390 | - | 2735039..2735164 (+) | 126 | Protein_2584 | DUF551 domain-containing protein | - |
| HV018_RS22700 (HV018_13015) | - | 2735150..2735884 (+) | 735 | WP_420870615.1 | DUF551 domain-containing protein | - |
| HV018_RS13055 (HV018_13020) | - | 2735985..2736329 (+) | 345 | WP_181236762.1 | hypothetical protein | - |
| HV018_RS13060 (HV018_13025) | - | 2736404..2736649 (+) | 246 | WP_000005726.1 | excisionase family protein | - |
| HV018_RS13065 (HV018_13030) | - | 2736695..2737999 (+) | 1305 | WP_021514423.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19154.34 Da Isoelectric Point: 7.4686
>NTDB_id=462603 HV018_RS13020 WP_000168264.1 2732517..2733032(+) (ssb) [Escherichia marmotae strain RHB42-C09]
MASRGVNKVIIIGRLGHDPEIRYSPSGTAFANLTVATSEQWRDKQTGEQKEQTEWHRVVMSGKLAEIASEYLRKGSEVYL
EGKLRTRKWQDQSGQDRFTTEVIVGVGGTMQMLGGKQGGNEQSSPQRNNGQQQRQQPQQQGNHSEPPMDFDDDIPFAPVT
LPFPRHAIHAI
MASRGVNKVIIIGRLGHDPEIRYSPSGTAFANLTVATSEQWRDKQTGEQKEQTEWHRVVMSGKLAEIASEYLRKGSEVYL
EGKLRTRKWQDQSGQDRFTTEVIVGVGGTMQMLGGKQGGNEQSSPQRNNGQQQRQQPQQQGNHSEPPMDFDDDIPFAPVT
LPFPRHAIHAI
Nucleotide
Download Length: 516 bp
>NTDB_id=462603 HV018_RS13020 WP_000168264.1 2732517..2733032(+) (ssb) [Escherichia marmotae strain RHB42-C09]
ATGGCAAGCAGAGGCGTAAATAAGGTGATCATTATTGGTCGCCTTGGGCATGATCCAGAAATCAGATATTCACCTTCAGG
AACGGCATTTGCAAACCTTACAGTTGCTACGTCAGAACAATGGCGTGATAAGCAAACTGGAGAGCAAAAGGAGCAGACGG
AGTGGCACCGTGTGGTAATGAGCGGGAAACTGGCAGAAATTGCCAGCGAATATCTGCGAAAAGGCTCTGAGGTTTATCTT
GAAGGCAAATTGCGGACAAGAAAATGGCAGGATCAAAGCGGACAGGATCGGTTCACTACCGAAGTCATCGTGGGCGTTGG
TGGAACCATGCAAATGCTTGGTGGCAAGCAAGGAGGCAATGAACAGTCTTCACCTCAGCGAAATAATGGTCAGCAACAAA
GACAGCAACCTCAGCAGCAGGGAAATCACAGCGAACCACCTATGGATTTTGACGACGATATCCCCTTTGCACCAGTAACT
CTCCCCTTCCCTCGTCACGCTATTCACGCAATTTAA
ATGGCAAGCAGAGGCGTAAATAAGGTGATCATTATTGGTCGCCTTGGGCATGATCCAGAAATCAGATATTCACCTTCAGG
AACGGCATTTGCAAACCTTACAGTTGCTACGTCAGAACAATGGCGTGATAAGCAAACTGGAGAGCAAAAGGAGCAGACGG
AGTGGCACCGTGTGGTAATGAGCGGGAAACTGGCAGAAATTGCCAGCGAATATCTGCGAAAAGGCTCTGAGGTTTATCTT
GAAGGCAAATTGCGGACAAGAAAATGGCAGGATCAAAGCGGACAGGATCGGTTCACTACCGAAGTCATCGTGGGCGTTGG
TGGAACCATGCAAATGCTTGGTGGCAAGCAAGGAGGCAATGAACAGTCTTCACCTCAGCGAAATAATGGTCAGCAACAAA
GACAGCAACCTCAGCAGCAGGGAAATCACAGCGAACCACCTATGGATTTTGACGACGATATCCCCTTTGCACCAGTAACT
CTCCCCTTCCCTCGTCACGCTATTCACGCAATTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
62.712 |
100 |
0.649 |
| ssb | Glaesserella parasuis strain SC1401 |
52.486 |
100 |
0.556 |
| ssb | Neisseria gonorrhoeae MS11 |
42.045 |
100 |
0.433 |
| ssb | Neisseria meningitidis MC58 |
41.477 |
100 |
0.427 |