Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV042_RS26580 Genome accession   NZ_CP058180
Coordinates   5565007..5565534 (-) Length   175 a.a.
NCBI ID   WP_004097799.1    Uniprot ID   A0A0J2K732
Organism   Klebsiella grimontii strain RHBSTW-00039     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5560007..5570534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV042_RS26570 (HV042_26580) - 5560526..5562787 (-) 2262 WP_064342071.1 TonB-dependent siderophore receptor -
  HV042_RS26575 (HV042_26585) - 5563394..5564920 (+) 1527 WP_049087466.1 lytic transglycosylase F -
  HV042_RS26580 (HV042_26590) ssb 5565007..5565534 (-) 528 WP_004097799.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HV042_RS26585 (HV042_26595) uvrA 5565781..5568606 (+) 2826 WP_004097797.1 excinuclease ABC subunit UvrA -
  HV042_RS26590 (HV042_26600) - 5568739..5568975 (+) 237 WP_181334657.1 hypothetical protein -
  HV042_RS26595 (HV042_26605) - 5569011..5569175 (+) 165 WP_004137542.1 hypothetical protein -
  HV042_RS26600 (HV042_26610) - 5569184..5569537 (-) 354 WP_004127822.1 MmcQ/YjbR family DNA-binding protein -
  HV042_RS26605 (HV042_26615) - 5569540..5569956 (-) 417 WP_004137545.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18776.81 Da        Isoelectric Point: 5.2456

>NTDB_id=462525 HV042_RS26580 WP_004097799.1 5565007..5565534(-) (ssb) [Klebsiella grimontii strain RHBSTW-00039]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQQGAGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=462525 HV042_RS26580 WP_004097799.1 5565007..5565534(-) (ssb) [Klebsiella grimontii strain RHBSTW-00039]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTGGCCGGCGAGTATCTGCGTAAAGGTTCTCAGGTCTACATT
GAAGGCCAGCTGCGTACGCGTAAATGGACTGACCAATCCGGTCAGGAAAAATACACCACCGAAGTTGTGGTTAACGTTGG
CGGCACGATGCAAATGCTCGGCGGTCGTCAGCAGGGCGCAGGCGCCCCGGCAGGCGGCGGTCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCGCAGGGCGGAAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGGCTCCGGCAGCC
CCTTCCAATGAGCCGCCGATGGACTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J2K732

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.771
  ssb Glaesserella parasuis strain SC1401

57.838

100

0.611
  ssb Neisseria meningitidis MC58

48.045

100

0.491
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.491