Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV043_RS01830 Genome accession   NZ_CP058175
Coordinates   379602..380138 (+) Length   178 a.a.
NCBI ID   WP_063863304.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain RHBSTW-00040     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 374602..385138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV043_RS01805 (HV043_01805) - 374853..375062 (-) 210 WP_127791593.1 hypothetical protein -
  HV043_RS01810 (HV043_01810) - 375131..375856 (+) 726 WP_045282282.1 TIGR03761 family integrating conjugative element protein -
  HV043_RS01815 (HV043_01815) - 375858..376412 (+) 555 WP_045282283.1 hypothetical protein -
  HV043_RS01820 (HV043_01820) - 376428..378437 (+) 2010 WP_045282284.1 DNA topoisomerase III -
  HV043_RS01825 (HV043_01825) - 379073..379543 (+) 471 WP_016807974.1 STY4534 family ICE replication protein -
  HV043_RS01830 (HV043_01830) ssb 379602..380138 (+) 537 WP_063863304.1 single-stranded DNA-binding protein Machinery gene
  HV043_RS01835 (HV043_01835) - 380203..380445 (+) 243 WP_045282286.1 DUF4160 domain-containing protein -
  HV043_RS01840 (HV043_01840) - 380429..380677 (+) 249 WP_004115558.1 DUF2442 domain-containing protein -
  HV043_RS01845 (HV043_01845) - 380814..381479 (+) 666 WP_045282287.1 PilL N-terminal domain-containing protein -
  HV043_RS01850 (HV043_01850) - 381476..382234 (+) 759 WP_045282288.1 hypothetical protein -
  HV043_RS01855 (HV043_01855) - 382246..382968 (+) 723 WP_045282289.1 TIGR03759 family integrating conjugative element protein -
  HV043_RS01860 (HV043_01860) - 382947..383582 (+) 636 WP_045282290.1 lytic transglycosylase domain-containing protein -
  HV043_RS01865 (HV043_01865) - 383588..384121 (+) 534 WP_045282291.1 integrating conjugative element protein -
  HV043_RS01870 (HV043_01870) - 384121..384693 (+) 573 WP_039187762.1 restriction endonuclease -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19170.32 Da        Isoelectric Point: 6.7299

>NTDB_id=462488 HV043_RS01830 WP_063863304.1 379602..380138(+) (ssb) [Enterobacter hormaechei strain RHBSTW-00040]
MSSRGVNKVILVGNLGQDPEVRYIPNGSAVATLSLATSESWRDKQSGEQKEVTEWHRVVIFGKLAEIAGEYMRKGSQVYI
EGQLRTRKWTDQSGQEKYITEVVVNIGGTMQMLGGRQSGSGQNTSSRNDWGQPQQPSGPTHSGQASGGSAGAPPMDFDDD
IPFIGFGYGVPKSAIHAL

Nucleotide


Download         Length: 537 bp        

>NTDB_id=462488 HV043_RS01830 WP_063863304.1 379602..380138(+) (ssb) [Enterobacter hormaechei strain RHBSTW-00040]
ATGTCCTCACGCGGCGTTAACAAGGTGATTCTTGTCGGTAATCTCGGCCAGGATCCTGAAGTGCGTTATATTCCCAATGG
CAGTGCAGTTGCCACCCTTTCTCTGGCCACGTCTGAGAGCTGGCGTGATAAGCAGTCCGGTGAACAGAAAGAAGTGACCG
AATGGCACCGAGTGGTTATTTTCGGCAAGCTGGCAGAAATTGCGGGTGAATATATGCGCAAAGGCTCCCAGGTTTACATC
GAGGGCCAGCTGCGCACACGCAAATGGACCGATCAGTCCGGCCAGGAGAAATACATCACAGAGGTGGTGGTAAACATTGG
TGGCACTATGCAGATGCTTGGCGGTCGCCAGTCCGGCAGCGGTCAGAATACGTCTTCCCGGAATGACTGGGGCCAGCCTC
AGCAACCTTCCGGACCGACTCACAGTGGCCAGGCTTCCGGCGGCAGTGCCGGTGCGCCACCGATGGACTTCGATGACGAT
ATACCGTTCATTGGATTCGGGTATGGAGTACCAAAATCGGCAATCCATGCACTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

63.842

99.438

0.635
  ssb Glaesserella parasuis strain SC1401

50.829

100

0.517
  ssb Neisseria gonorrhoeae MS11

43.75

98.876

0.433
  ssb Neisseria meningitidis MC58

43.75

98.876

0.433