Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV092_RS24395 Genome accession   NZ_CP058131
Coordinates   4971030..4971554 (-) Length   174 a.a.
NCBI ID   WP_004151744.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain RHBSTW-00138     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4966030..4976554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV092_RS24385 (HV092_24395) - 4966481..4968739 (-) 2259 WP_043519224.1 TonB-dependent siderophore receptor -
  HV092_RS24390 (HV092_24400) - 4969328..4970908 (+) 1581 WP_023319488.1 lytic transglycosylase F -
  HV092_RS24395 (HV092_24405) ssb 4971030..4971554 (-) 525 WP_004151744.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HV092_RS24400 (HV092_24410) uvrA 4971806..4974631 (+) 2826 WP_004206306.1 excinuclease ABC subunit UvrA -
  HV092_RS24405 (HV092_24415) - 4974632..4974988 (-) 357 WP_004206305.1 MmcQ/YjbR family DNA-binding protein -
  HV092_RS24410 (HV092_24420) - 4974992..4975408 (-) 417 WP_004206303.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HV092_RS24415 (HV092_24425) aphA 4975540..4976253 (-) 714 WP_004151745.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18711.70 Da        Isoelectric Point: 5.2358

>NTDB_id=462302 HV092_RS24395 WP_004151744.1 4971030..4971554(-) (ssb) [Klebsiella quasipneumoniae strain RHBSTW-00138]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANFTLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQDKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=462302 HV092_RS24395 WP_004151744.1 4971030..4971554(-) (ssb) [Klebsiella quasipneumoniae strain RHBSTW-00138]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCAAGTGG
CGGCGCAGTCGCCAACTTCACGCTGGCAACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCTGAAGTCGCTGGTGAGTATCTGCGTAAAGGCTCTCAGGTGTACATT
GAAGGCCAACTGCGTACCCGCAAGTGGACCGATCAATCCGGTCAGGACAAATACACCACTGAAGTGGTGGTAAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCGGCAGGCGGCGGACAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGTGCGCAGTCCCGTCCGCAGCAGCAGGCTCCGGCAGCGCCT
TCCAACGAACCGCCGATGGACTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.776
  ssb Glaesserella parasuis strain SC1401

59.239

100

0.626
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5