Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV105_RS27655 Genome accession   NZ_CP058118
Coordinates   5764122..5764649 (-) Length   175 a.a.
NCBI ID   WP_004097799.1    Uniprot ID   A0A0J2K732
Organism   Klebsiella michiganensis strain RHBSTW-00167     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5759122..5769649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV105_RS27645 (HV105_27645) - 5759592..5761853 (-) 2262 WP_181250290.1 TonB-dependent siderophore receptor -
  HV105_RS27650 (HV105_27650) - 5762449..5764035 (+) 1587 WP_181250291.1 lytic transglycosylase F -
  HV105_RS27655 (HV105_27655) ssb 5764122..5764649 (-) 528 WP_004097799.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HV105_RS27660 (HV105_27660) uvrA 5764896..5767721 (+) 2826 WP_181250292.1 excinuclease ABC subunit UvrA -
  HV105_RS27665 (HV105_27665) - 5767854..5768264 (+) 411 WP_004097795.1 hypothetical protein -
  HV105_RS27670 (HV105_27670) - 5768267..5768584 (+) 318 WP_181250293.1 hypothetical protein -
  HV105_RS27675 (HV105_27675) - 5768587..5768940 (-) 354 WP_004097793.1 MmcQ/YjbR family DNA-binding protein -
  HV105_RS27680 (HV105_27680) - 5768943..5769359 (-) 417 WP_004097792.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18776.81 Da        Isoelectric Point: 5.2456

>NTDB_id=462257 HV105_RS27655 WP_004097799.1 5764122..5764649(-) (ssb) [Klebsiella michiganensis strain RHBSTW-00167]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQQGAGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=462257 HV105_RS27655 WP_004097799.1 5764122..5764649(-) (ssb) [Klebsiella michiganensis strain RHBSTW-00167]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTGGCCGGCGAGTATCTGCGTAAAGGTTCTCAGGTCTATATT
GAAGGCCAGCTGCGTACCCGTAAATGGACTGACCAATCCGGTCAGGAAAAATACACCACCGAGGTTGTCGTTAACGTTGG
CGGCACGATGCAAATGCTCGGCGGTCGTCAGCAGGGCGCGGGCGCCCCGGCAGGCGGTGGTCAGCAGCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCGCAGGGCGGAAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGGCGCCGGCAGCC
CCTTCCAATGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J2K732

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.771
  ssb Glaesserella parasuis strain SC1401

57.838

100

0.611
  ssb Neisseria meningitidis MC58

48.045

100

0.491
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.491