Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HV105_RS26055 | Genome accession | NZ_CP058118 |
| Coordinates | 5421951..5422487 (-) | Length | 178 a.a. |
| NCBI ID | WP_016807973.1 | Uniprot ID | A0A6L3Y3G1 |
| Organism | Klebsiella michiganensis strain RHBSTW-00167 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 5362171..5434178 | 5421951..5422487 | within | 0 |
Gene organization within MGE regions
Location: 5362171..5434178
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV105_RS25755 (HV105_25755) | - | 5362415..5363446 (-) | 1032 | WP_016807923.1 | site-specific integrase | - |
| HV105_RS25760 (HV105_25760) | - | 5363507..5365126 (-) | 1620 | WP_016807924.1 | TraI domain-containing protein | - |
| HV105_RS25765 (HV105_25765) | - | 5365193..5366701 (-) | 1509 | WP_029591438.1 | UvrD-helicase domain-containing protein | - |
| HV105_RS25770 (HV105_25770) | - | 5367012..5368868 (-) | 1857 | WP_029591439.1 | DUF2357 domain-containing protein | - |
| HV105_RS25775 (HV105_25775) | - | 5368880..5371438 (-) | 2559 | WP_181250252.1 | AAA family ATPase | - |
| HV105_RS25780 (HV105_25780) | - | 5371777..5372709 (-) | 933 | WP_016807928.1 | DUF1281 domain-containing protein | - |
| HV105_RS25785 (HV105_25785) | - | 5372815..5373801 (-) | 987 | WP_016807929.1 | ArdC-like ssDNA-binding domain-containing protein | - |
| HV105_RS25790 (HV105_25790) | - | 5373883..5374230 (-) | 348 | WP_016807930.1 | hypothetical protein | - |
| HV105_RS25795 (HV105_25795) | - | 5374298..5374900 (-) | 603 | WP_016807931.1 | DUF3085 domain-containing protein | - |
| HV105_RS25800 (HV105_25800) | - | 5374976..5375623 (-) | 648 | WP_016807932.1 | hypothetical protein | - |
| HV105_RS25805 (HV105_25805) | - | 5375708..5376073 (-) | 366 | WP_016807933.1 | hypothetical protein | - |
| HV105_RS25810 (HV105_25810) | - | 5376152..5376526 (-) | 375 | WP_016807934.1 | hypothetical protein | - |
| HV105_RS25815 (HV105_25815) | - | 5376519..5376887 (-) | 369 | WP_045282254.1 | hypothetical protein | - |
| HV105_RS25820 (HV105_25820) | - | 5377291..5377593 (+) | 303 | WP_016807936.1 | PIN domain-containing protein | - |
| HV105_RS25825 (HV105_25825) | - | 5377622..5378330 (+) | 709 | Protein_5102 | IS1 family transposase | - |
| HV105_RS25830 (HV105_25830) | - | 5378409..5379104 (+) | 696 | Protein_5103 | IS1 family transposase | - |
| HV105_RS25835 (HV105_25835) | - | 5379119..5379259 (-) | 141 | Protein_5104 | maltose acetyltransferase domain-containing protein | - |
| HV105_RS25840 (HV105_25840) | lacY | 5379343..5380578 (-) | 1236 | WP_064146656.1 | lactose permease | - |
| HV105_RS25845 (HV105_25845) | lacZ | 5380630..5383704 (-) | 3075 | WP_181250253.1 | beta-galactosidase | - |
| HV105_RS25850 (HV105_25850) | lacI | 5383827..5384909 (-) | 1083 | WP_024193489.1 | DNA-binding transcriptional repressor LacI | - |
| HV105_RS25855 (HV105_25855) | - | 5385203..5385409 (+) | 207 | WP_016809494.1 | DUF1471 domain-containing protein | - |
| HV105_RS25860 (HV105_25860) | - | 5385919..5386818 (-) | 900 | WP_026056053.1 | integrase domain-containing protein | - |
| HV105_RS25865 (HV105_25865) | - | 5388013..5388690 (+) | 678 | Protein_5110 | IS630 family transposase | - |
| HV105_RS25870 (HV105_25870) | - | 5388741..5389289 (-) | 549 | WP_221891797.1 | hypothetical protein | - |
| HV105_RS32335 | - | 5389501..5389743 (-) | 243 | WP_323807205.1 | DUF4113 domain-containing protein | - |
| HV105_RS32105 | - | 5389779..5390321 (-) | 543 | WP_050547113.1 | hypothetical protein | - |
| HV105_RS25880 (HV105_25880) | - | 5390375..5391483 (+) | 1109 | WP_100214960.1 | IS3 family transposase | - |
| HV105_RS25885 (HV105_25885) | - | 5391835..5392212 (+) | 378 | WP_016808242.1 | hypothetical protein | - |
| HV105_RS25890 (HV105_25890) | - | 5392244..5393752 (-) | 1509 | WP_016808243.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| HV105_RS25895 (HV105_25895) | - | 5393755..5394093 (-) | 339 | WP_016808244.1 | hypothetical protein | - |
| HV105_RS25900 (HV105_25900) | - | 5394104..5395579 (-) | 1476 | WP_016808245.1 | integrating conjugative element protein | - |
| HV105_RS25905 (HV105_25905) | - | 5395579..5396571 (-) | 993 | WP_016808246.1 | TIGR03756 family integrating conjugative element protein | - |
| HV105_RS25910 (HV105_25910) | - | 5396568..5396966 (-) | 399 | WP_016808247.1 | TIGR03757 family integrating conjugative element protein | - |
| HV105_RS25915 (HV105_25915) | - | 5397929..5399233 (-) | 1305 | WP_016808248.1 | restriction endonuclease | - |
| HV105_RS25920 (HV105_25920) | - | 5399237..5400376 (-) | 1140 | WP_016808249.1 | AAA family ATPase | - |
| HV105_RS25925 (HV105_25925) | - | 5400366..5400938 (-) | 573 | WP_016808250.1 | hypothetical protein | - |
| HV105_RS25930 (HV105_25930) | - | 5400931..5403150 (-) | 2220 | WP_016808251.1 | N-6 DNA methylase | - |
| HV105_RS25935 (HV105_25935) | - | 5403147..5404241 (-) | 1095 | WP_016808252.1 | DNA adenine methylase | - |
| HV105_RS25940 (HV105_25940) | - | 5404933..5405310 (-) | 378 | WP_016808254.1 | hypothetical protein | - |
| HV105_RS25945 (HV105_25945) | - | 5405307..5408165 (-) | 2859 | WP_016808255.1 | conjugative transfer ATPase | - |
| HV105_RS25950 (HV105_25950) | - | 5408165..5408575 (-) | 411 | WP_016808256.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| HV105_RS25955 (HV105_25955) | - | 5408575..5408943 (-) | 369 | WP_016151320.1 | hypothetical protein | - |
| HV105_RS25960 (HV105_25960) | - | 5408954..5410456 (-) | 1503 | WP_016808257.1 | TIGR03752 family integrating conjugative element protein | - |
| HV105_RS25965 (HV105_25965) | - | 5410446..5411396 (-) | 951 | WP_016808258.1 | TIGR03749 family integrating conjugative element protein | - |
| HV105_RS25970 (HV105_25970) | - | 5411396..5412055 (-) | 660 | WP_016808259.1 | TIGR03746 family integrating conjugative element protein | - |
| HV105_RS25975 (HV105_25975) | - | 5412052..5412408 (-) | 357 | WP_004115534.1 | TIGR03750 family conjugal transfer protein | - |
| HV105_RS25980 (HV105_25980) | - | 5412421..5412807 (-) | 387 | WP_016808260.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| HV105_RS25985 (HV105_25985) | - | 5412842..5413084 (-) | 243 | WP_003029734.1 | TIGR03758 family integrating conjugative element protein | - |
| HV105_RS25990 (HV105_25990) | - | 5413084..5413431 (-) | 348 | WP_016808261.1 | RAQPRD family integrative conjugative element protein | - |
| HV105_RS25995 (HV105_25995) | - | 5413616..5413963 (+) | 348 | WP_016808262.1 | FxLYD domain-containing protein | - |
| HV105_RS26000 (HV105_26000) | - | 5414054..5414812 (-) | 759 | WP_006785966.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| HV105_RS26005 (HV105_26005) | traD | 5414805..5416904 (-) | 2100 | WP_016808263.1 | type IV conjugative transfer system coupling protein TraD | - |
| HV105_RS26010 (HV105_26010) | - | 5416897..5417385 (-) | 489 | WP_016808264.1 | hypothetical protein | - |
| HV105_RS26015 (HV105_26015) | - | 5417396..5417968 (-) | 573 | WP_017145109.1 | restriction endonuclease | - |
| HV105_RS26020 (HV105_26020) | - | 5417968..5418501 (-) | 534 | WP_016807967.1 | integrating conjugative element protein | - |
| HV105_RS26025 (HV105_26025) | - | 5418507..5419142 (-) | 636 | WP_088221852.1 | transglycosylase SLT domain-containing protein | - |
| HV105_RS26030 (HV105_26030) | - | 5419121..5419843 (-) | 723 | WP_016807969.1 | TIGR03759 family integrating conjugative element protein | - |
| HV105_RS26035 (HV105_26035) | - | 5419855..5420613 (-) | 759 | WP_016807970.1 | hypothetical protein | - |
| HV105_RS26040 (HV105_26040) | - | 5420610..5421275 (-) | 666 | WP_016807971.1 | PilL N-terminal domain-containing protein | - |
| HV105_RS26045 (HV105_26045) | - | 5421412..5421660 (-) | 249 | WP_004115558.1 | DUF2442 domain-containing protein | - |
| HV105_RS26050 (HV105_26050) | - | 5421644..5421886 (-) | 243 | WP_016807972.1 | DUF4160 domain-containing protein | - |
| HV105_RS26055 (HV105_26055) | ssb | 5421951..5422487 (-) | 537 | WP_016807973.1 | single-stranded DNA-binding protein | Machinery gene |
| HV105_RS26060 (HV105_26060) | - | 5422548..5423018 (-) | 471 | WP_016807974.1 | STY4534 family ICE replication protein | - |
| HV105_RS26065 (HV105_26065) | - | 5423654..5425663 (-) | 2010 | WP_016807975.1 | DNA topoisomerase III | - |
| HV105_RS26070 (HV105_26070) | - | 5425679..5426233 (-) | 555 | WP_016807976.1 | hypothetical protein | - |
| HV105_RS26075 (HV105_26075) | - | 5426235..5426960 (-) | 726 | WP_016807977.1 | TIGR03761 family integrating conjugative element protein | - |
| HV105_RS26080 (HV105_26080) | - | 5427029..5427265 (+) | 237 | WP_134892789.1 | hypothetical protein | - |
| HV105_RS26085 (HV105_26085) | - | 5427252..5428490 (-) | 1239 | WP_016807978.1 | STY4528 family pathogenicity island replication protein | - |
| HV105_RS26090 (HV105_26090) | - | 5428590..5428838 (-) | 249 | WP_004115572.1 | hypothetical protein | - |
| HV105_RS26095 (HV105_26095) | - | 5428835..5429425 (-) | 591 | WP_006777722.1 | DUF2857 domain-containing protein | - |
| HV105_RS26100 (HV105_26100) | - | 5429432..5430142 (-) | 711 | WP_016807979.1 | DUF2786 domain-containing protein | - |
| HV105_RS26105 (HV105_26105) | - | 5430135..5431835 (-) | 1701 | WP_016807980.1 | ParB family protein | - |
| HV105_RS26110 (HV105_26110) | dnaB-PI | 5431832..5433202 (-) | 1371 | WP_004115579.1 | SPI-7-type island replicative DNA helicase | - |
| HV105_RS26115 (HV105_26115) | - | 5433195..5434070 (-) | 876 | WP_016807981.1 | ParA family protein | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 19182.31 Da Isoelectric Point: 6.7299
>NTDB_id=462256 HV105_RS26055 WP_016807973.1 5421951..5422487(-) (ssb) [Klebsiella michiganensis strain RHBSTW-00167]
MSSRGVNKVILVGNLGQDPEVRYIPNGSAVATLSLATSESWRDKQSGEQKEVTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYITEVVVNIGGTMQMLGGRQSGSGQNTSSRNDWGQPQQPSGPTHSGQASGSSAGAPPMDFDDD
IPFIGFGYGVPKSAIHAL
MSSRGVNKVILVGNLGQDPEVRYIPNGSAVATLSLATSESWRDKQSGEQKEVTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYITEVVVNIGGTMQMLGGRQSGSGQNTSSRNDWGQPQQPSGPTHSGQASGSSAGAPPMDFDDD
IPFIGFGYGVPKSAIHAL
Nucleotide
Download Length: 537 bp
>NTDB_id=462256 HV105_RS26055 WP_016807973.1 5421951..5422487(-) (ssb) [Klebsiella michiganensis strain RHBSTW-00167]
ATGTCCTCACGCGGCGTTAACAAGGTGATTCTTGTCGGTAATCTCGGCCAGGATCCTGAAGTGCGTTATATTCCCAATGG
CAGTGCAGTTGCCACCCTTTCTCTGGCCACGTCTGAGAGCTGGCGTGATAAGCAGTCCGGTGAACAGAAAGAAGTGACCG
AATGGCACCGGGTGGTTATTTTCGGCAAGCTGGCAGAAATTGCGGGTGAATATCTGCGCAAAGGCTCCCAGGTTTACATC
GAGGGCCAGCTGCGCACACGCAAATGGACCGATCAGTCTGGCCAGGAGAAATACATCACAGAGGTGGTGGTAAACATTGG
TGGCACCATGCAGATGCTTGGCGGTCGCCAGTCCGGCAGCGGTCAGAATACGTCTTCCCGGAATGACTGGGGCCAGCCTC
AGCAACCTTCCGGACCGACTCACAGTGGCCAGGCTTCCGGCAGCAGTGCCGGTGCGCCACCGATGGACTTCGATGACGAT
ATACCGTTCATTGGATTCGGGTATGGAGTACCAAAATCGGCAATCCATGCACTCTGA
ATGTCCTCACGCGGCGTTAACAAGGTGATTCTTGTCGGTAATCTCGGCCAGGATCCTGAAGTGCGTTATATTCCCAATGG
CAGTGCAGTTGCCACCCTTTCTCTGGCCACGTCTGAGAGCTGGCGTGATAAGCAGTCCGGTGAACAGAAAGAAGTGACCG
AATGGCACCGGGTGGTTATTTTCGGCAAGCTGGCAGAAATTGCGGGTGAATATCTGCGCAAAGGCTCCCAGGTTTACATC
GAGGGCCAGCTGCGCACACGCAAATGGACCGATCAGTCTGGCCAGGAGAAATACATCACAGAGGTGGTGGTAAACATTGG
TGGCACCATGCAGATGCTTGGCGGTCGCCAGTCCGGCAGCGGTCAGAATACGTCTTCCCGGAATGACTGGGGCCAGCCTC
AGCAACCTTCCGGACCGACTCACAGTGGCCAGGCTTCCGGCAGCAGTGCCGGTGCGCCACCGATGGACTTCGATGACGAT
ATACCGTTCATTGGATTCGGGTATGGAGTACCAAAATCGGCAATCCATGCACTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
64.407 |
99.438 |
0.64 |
| ssb | Glaesserella parasuis strain SC1401 |
49.171 |
100 |
0.5 |
| ssb | Neisseria meningitidis MC58 |
44.633 |
99.438 |
0.444 |
| ssb | Neisseria gonorrhoeae MS11 |
44.318 |
98.876 |
0.438 |