Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HVV54_RS01105 Genome accession   NZ_CP058057
Coordinates   234540..235076 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia fergusonii strain RHB02-C22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 229540..240076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVV54_RS01085 (HVV54_01085) aphA 229832..230545 (+) 714 WP_001226935.1 acid phosphatase AphA -
  HVV54_RS01090 (HVV54_01090) - 230656..231072 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HVV54_RS01095 (HVV54_01095) - 231076..231432 (+) 357 WP_000155656.1 MmcQ/YjbR family DNA-binding protein -
  HVV54_RS01100 (HVV54_01100) uvrA 231464..234286 (-) 2823 WP_000357763.1 excinuclease ABC subunit UvrA -
  HVV54_RS01105 (HVV54_01105) ssb 234540..235076 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HVV54_RS01110 (HVV54_01110) - 235175..235456 (-) 282 WP_000201427.1 YjcB family protein -
  HVV54_RS01115 (HVV54_01115) soxS 235699..236022 (-) 324 WP_000019480.1 superoxide response transcriptional regulator SoxS -
  HVV54_RS01120 (HVV54_01120) soxR 236109..236573 (+) 465 WP_000412441.1 redox-sensitive transcriptional activator SoxR -
  HVV54_RS01125 (HVV54_01125) ghxP 237152..238501 (+) 1350 WP_000106866.1 guanine/hypoxanthine transporter GhxP -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=462196 HVV54_RS01105 WP_000168305.1 234540..235076(+) (ssb) [Escherichia fergusonii strain RHB02-C22]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=462196 HVV54_RS01105 WP_000168305.1 234540..235076(+) (ssb) [Escherichia fergusonii strain RHB02-C22]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACTGAAGTTGTGGTAAACGTTGG
CGGCACCATGCAGATGCTGGGCGGTCGTCAGGGCGGTGGCGCACCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGTAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489