Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HVX29_RS15435 Genome accession   NZ_CP057692
Coordinates   3211245..3211781 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia fergusonii strain RHB17-C11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3206245..3216781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVX29_RS15415 (HVX29_15415) aphA 3206537..3207250 (+) 714 WP_001226936.1 acid phosphatase AphA -
  HVX29_RS15420 (HVX29_15420) - 3207361..3207777 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HVX29_RS15425 (HVX29_15425) - 3207781..3208137 (+) 357 WP_000155656.1 MmcQ/YjbR family DNA-binding protein -
  HVX29_RS15430 (HVX29_15430) uvrA 3208169..3210991 (-) 2823 WP_000357765.1 excinuclease ABC subunit UvrA -
  HVX29_RS15435 (HVX29_15435) ssb 3211245..3211781 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HVX29_RS15440 (HVX29_15440) - 3211880..3212161 (-) 282 WP_000201427.1 YjcB family protein -
  HVX29_RS15445 (HVX29_15445) soxS 3212405..3212728 (-) 324 WP_000019480.1 superoxide response transcriptional regulator SoxS -
  HVX29_RS15450 (HVX29_15450) soxR 3212815..3213279 (+) 465 WP_000412441.1 redox-sensitive transcriptional activator SoxR -
  HVX29_RS15455 (HVX29_15455) ghxP 3213858..3215207 (+) 1350 WP_000106868.1 guanine/hypoxanthine transporter GhxP -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=462097 HVX29_RS15435 WP_000168305.1 3211245..3211781(+) (ssb) [Escherichia fergusonii strain RHB17-C11]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=462097 HVX29_RS15435 WP_000168305.1 3211245..3211781(+) (ssb) [Escherichia fergusonii strain RHB17-C11]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACTGAAGTTGTGGTAAACGTTGG
CGGCACCATGCAGATGCTGGGCGGTCGTCAGGGCGGTGGCGCACCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGTAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489