Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HVY08_RS01565 Genome accession   NZ_CP057504
Coordinates   345224..345760 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia fergusonii strain RHB24-C08     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 340224..350760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVY08_RS01545 (HVY08_01545) aphA 340516..341229 (+) 714 WP_001226935.1 acid phosphatase AphA -
  HVY08_RS01550 (HVY08_01550) - 341340..341756 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HVY08_RS01555 (HVY08_01555) - 341760..342116 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HVY08_RS01560 (HVY08_01560) uvrA 342148..344970 (-) 2823 WP_000357763.1 excinuclease ABC subunit UvrA -
  HVY08_RS01565 (HVY08_01565) ssb 345224..345760 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HVY08_RS01570 (HVY08_01570) - 345859..346140 (-) 282 WP_000201427.1 YjcB family protein -
  HVY08_RS01575 (HVY08_01575) soxS 346383..346706 (-) 324 WP_000019480.1 superoxide response transcriptional regulator SoxS -
  HVY08_RS01580 (HVY08_01580) soxR 346793..347257 (+) 465 WP_000412441.1 redox-sensitive transcriptional activator SoxR -
  HVY08_RS01585 (HVY08_01585) ghxP 347836..349185 (+) 1350 WP_000106866.1 guanine/hypoxanthine transporter GhxP -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=461824 HVY08_RS01565 WP_000168305.1 345224..345760(+) (ssb) [Escherichia fergusonii strain RHB24-C08]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=461824 HVY08_RS01565 WP_000168305.1 345224..345760(+) (ssb) [Escherichia fergusonii strain RHB24-C08]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACTGAAGTTGTGGTAAACGTTGG
CGGCACCATGCAGATGCTGGGCGGTCGTCAGGGCGGTGGCGCACCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGTAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489