Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HVY19_RS18885 Genome accession   NZ_CP057483
Coordinates   3989777..3990304 (-) Length   175 a.a.
NCBI ID   WP_181682127.1    Uniprot ID   -
Organism   Citrobacter sp. RHB25-C09     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3984777..3995304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVY19_RS18865 (HVY19_18880) soxR 3986494..3986952 (-) 459 WP_181682124.1 redox-sensitive transcriptional activator SoxR -
  HVY19_RS18870 (HVY19_18885) soxS 3987038..3987361 (+) 324 WP_042321117.1 superoxide response transcriptional regulator SoxS -
  HVY19_RS18875 (HVY19_18890) - 3987364..3988950 (-) 1587 WP_181682125.1 EAL domain-containing protein -
  HVY19_RS18880 (HVY19_18895) - 3989439..3989720 (+) 282 WP_181682126.1 YjcB family protein -
  HVY19_RS18885 (HVY19_18900) ssb 3989777..3990304 (-) 528 WP_181682127.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HVY19_RS18890 (HVY19_18905) uvrA 3990559..3993381 (+) 2823 WP_181682128.1 excinuclease ABC subunit UvrA -
  HVY19_RS18895 (HVY19_18910) - 3993464..3993820 (-) 357 WP_181682129.1 MmcQ/YjbR family DNA-binding protein -
  HVY19_RS18900 (HVY19_18915) aphA 3993960..3994673 (-) 714 WP_181682130.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18820.87 Da        Isoelectric Point: 5.2456

>NTDB_id=461816 HVY19_RS18885 WP_181682127.1 3989777..3990304(-) (ssb) [Citrobacter sp. RHB25-C09]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAAGGQQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=461816 HVY19_RS18885 WP_181682127.1 3989777..3990304(-) (ssb) [Citrobacter sp. RHB25-C09]
ATGGCCAGCAGAGGCGTAAATAAGGTTATTCTCGTGGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAGCAGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTTGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTACATT
GAAGGTCAGCTGCGTACGCGCAAATGGACCGATCAGTCCGGCGTTGAGAAATACACCACCGAAGTCGTGGTAAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGTGGCGGCGCGCCGGCAGCGGGTGGTCAACAGCAGCAGGGTGGCTGGG
GTCAGCCGCAGCAGCCGCAGGGCGGTAACCAGTTCAGCGGCGGCGCTCAGTCTCGTCCGCAGCAGTCTGCTCCGGCAGCA
CCGTCCAACGAACCGCCAATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.333

100

0.754
  ssb Glaesserella parasuis strain SC1401

55.978

100

0.589
  ssb Neisseria meningitidis MC58

48.045

100

0.491
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.491