Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV025_RS01190 Genome accession   NZ_CP056916
Coordinates   248195..248731 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia fergusonii strain RHB42-C24     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 243195..253731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV025_RS01170 (HV025_01170) aphA 243487..244200 (+) 714 WP_001226935.1 acid phosphatase AphA -
  HV025_RS01175 (HV025_01175) - 244311..244727 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HV025_RS01180 (HV025_01180) - 244731..245087 (+) 357 WP_181576021.1 MmcQ/YjbR family DNA-binding protein -
  HV025_RS01185 (HV025_01185) uvrA 245119..247941 (-) 2823 WP_181576022.1 excinuclease ABC subunit UvrA -
  HV025_RS01190 (HV025_01190) ssb 248195..248731 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HV025_RS01195 (HV025_01195) - 248830..249111 (-) 282 WP_000201427.1 YjcB family protein -
  HV025_RS01200 (HV025_01200) soxS 249354..249677 (-) 324 WP_000019480.1 superoxide response transcriptional regulator SoxS -
  HV025_RS01205 (HV025_01205) soxR 249764..250228 (+) 465 WP_000412441.1 redox-sensitive transcriptional activator SoxR -
  HV025_RS01210 (HV025_01210) ghxP 250807..252156 (+) 1350 WP_181576023.1 guanine/hypoxanthine transporter GhxP -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=461018 HV025_RS01190 WP_000168305.1 248195..248731(+) (ssb) [Escherichia fergusonii strain RHB42-C24]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=461018 HV025_RS01190 WP_000168305.1 248195..248731(+) (ssb) [Escherichia fergusonii strain RHB42-C24]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAATTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACTGAAGTTGTGGTAAACGTTGG
CGGCACCATGCAGATGCTGGGCGGTCGTCAGGGCGGTGGCGCACCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GTGGTTGGGGTCAACCTCAGCAGCCGCAGGGTGGTAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489