Detailed information NTG0046090

Bioinformatically predicted

Overview

• Name: xerS
• Type: Machinery gene
• Locus tag: LILO_RS05850
• Genome accession: NC_020450
• Coordinates: 1208992..1210062 (-)
• Length: 356 a.a.
• NCBI ID: WP_015426412.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis IO-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1203992..1215062

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LILO_RS05835 (lilo_1119)	dprA	1204290..1205138 (+)	849	WP_015426410.1	DNA-processing protein DprA	Machinery gene
LILO_RS05840 (lilo_1120)	topA	1205400..1207532 (+)	2133	WP_015426411.1	type I DNA topoisomerase	-
LILO_RS05845 (lilo_1121)	trmFO	1207604..1208947 (+)	1344	WP_003131150.1	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	-
LILO_RS05850 (lilo_1122)	xerS	1208992..1210062 (-)	1071	WP_015426412.1	tyrosine recombinase XerS	Machinery gene
LILO_RS05855 (lilo_1123)	-	1210547..1210834 (-)	288	WP_015426413.1	hypothetical protein	-
LILO_RS05860 (lilo_1124)	xerS	1210918..1211973 (-)	1056	WP_015426414.1	tyrosine recombinase XerS	Machinery gene
LILO_RS11960	-	1212514..1212801 (+)	288	WP_148284411.1	hypothetical protein	-
LILO_RS05865 (lilo_1125)	-	1212918..1213412 (+)	495	WP_015426415.1	hypothetical protein	-
LILO_RS05870 (lilo_1126)	recA	1213604..1214629 (-)	1026	WP_042230342.1	recombinase RecA	-
LILO_RS05875	-	1214644..1215036 (-)	393	WP_042230345.1	hypothetical protein	-

Sequence

Protein

• Length: 356 a.a.
• Molecular weight: 41298.07 Da
• Isoelectric Point: 9.5843

>NTDB_id=46090 LILO_RS05850 WP_015426412.1 1208992..1210062(-) (xerS) [Lactococcus lactis subsp. lactis IO-1]
MKREQLIQNIEKLKHIMPSYVLEYYQSKLTIPYSLNTLYEYLKEYERFFSWLVDSGVADVDKITDVSLSVLENLTKRDLE
SFILYLRERPRLNTGSTRYGVSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNVMKKVQTKKKSETLASRAENIKGK
LFLGDETQGFLDYIDNEYEKTLSNRARSSFFKNKERDLAIIALILASGIRLSEAVNVDLRDLNLITMVVEVTRKGGKRDA
VPYAPFAKTYFERYLEVRSQRYKTTAKDTAFFVTLYRDVPSRIDPSSVEKLVAKYSQAFKVRVTPHKLRHTLATRLYAQT
NSQVLVSNQLGHASTQVTDLYTHIINEEQKNALDNL

Nucleotide

• Length: 1071 bp

>NTDB_id=46090 LILO_RS05850 WP_015426412.1 1208992..1210062(-) (xerS) [Lactococcus lactis subsp. lactis IO-1]
ATGAAACGTGAACAATTAATACAAAATATTGAAAAACTAAAACATATCATGCCTTCTTATGTTTTAGAATATTATCAATC
TAAACTTACTATTCCTTATAGTTTGAATACACTTTATGAATATCTTAAAGAATATGAACGTTTCTTTAGTTGGTTGGTCG
ATTCTGGAGTTGCTGATGTTGATAAGATAACTGATGTTTCACTCTCGGTTTTAGAAAACTTAACTAAACGAGATTTGGAG
TCATTTATCCTCTATCTTAGGGAGAGACCCCGTTTAAATACGGGCTCTACCCGTTATGGGGTAAGTCAAACAACAATTAA
TCGTACTCTATCTGCTCTTTCTAGTCTTTATAAATACCTTACTGAAGAGGTTGAAAATGAAGATGGTGAGCCTTACTTCT
ATCGTAATGTTATGAAGAAGGTACAGACTAAGAAAAAATCCGAAACTTTAGCTTCTCGTGCTGAGAATATTAAAGGGAAG
CTTTTTTTGGGAGATGAAACTCAAGGTTTTCTTGACTATATTGATAATGAATACGAAAAAACATTATCAAATAGAGCTCG
TTCTAGTTTTTTCAAAAATAAAGAACGTGATTTAGCAATTATTGCACTTATTTTAGCCTCTGGTATTCGTCTTTCTGAGG
CAGTTAATGTAGATTTAAGAGATTTAAATCTTATTACTATGGTTGTTGAGGTGACTCGTAAAGGAGGAAAAAGGGATGCT
GTTCCTTATGCTCCTTTTGCCAAAACTTATTTTGAAAGATACTTGGAGGTACGAAGTCAACGTTATAAGACTACAGCGAA
AGATACTGCATTTTTTGTGACACTTTATAGAGATGTTCCTAGCCGAATAGATCCTTCTAGTGTTGAAAAATTAGTTGCTA
AATATTCTCAAGCTTTTAAAGTACGAGTGACCCCTCACAAACTTAGACATACACTTGCGACTCGACTTTATGCTCAAACA
AATTCCCAGGTATTGGTGAGCAATCAGTTAGGGCATGCTTCCACTCAAGTTACAGACCTTTATACTCATATTATCAATGA
AGAACAAAAAAATGCTCTAGATAATCTATAA

Domains

Predicted by InterProScan.

• Phage integrase family (Phage_integrase) (182-344)

• Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4) (33-122)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xerS	Streptococcus pneumoniae R6	76.685	100	0.767