Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   LILO_RS05860 Genome accession   NC_020450
Coordinates   1210918..1211973 (-) Length   351 a.a.
NCBI ID   WP_015426414.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis IO-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1205918..1216973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LILO_RS05845 (lilo_1121) trmFO 1207604..1208947 (+) 1344 WP_003131150.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  LILO_RS05850 (lilo_1122) xerS 1208992..1210062 (-) 1071 WP_015426412.1 tyrosine recombinase XerS Machinery gene
  LILO_RS05855 (lilo_1123) - 1210547..1210834 (-) 288 WP_015426413.1 hypothetical protein -
  LILO_RS05860 (lilo_1124) xerS 1210918..1211973 (-) 1056 WP_015426414.1 tyrosine recombinase XerS Machinery gene
  LILO_RS11960 - 1212514..1212801 (+) 288 WP_148284411.1 hypothetical protein -
  LILO_RS05865 (lilo_1125) - 1212918..1213412 (+) 495 WP_015426415.1 hypothetical protein -
  LILO_RS05870 (lilo_1126) recA 1213604..1214629 (-) 1026 WP_042230342.1 recombinase RecA -
  LILO_RS05875 - 1214644..1215036 (-) 393 WP_042230345.1 hypothetical protein -
  LILO_RS05880 (lilo_1127) - 1215033..1216484 (-) 1452 WP_015426417.1 Y-family DNA polymerase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 40663.26 Da        Isoelectric Point: 9.3141

>NTDB_id=46091 LILO_RS05860 WP_015426414.1 1210918..1211973(-) (xerS) [Lactococcus lactis subsp. lactis IO-1]
MSENHGYQYNVNKLMLEFPNYVNEYIQSKRVVPLSEASIYEYCLDFRKYLQWLIDGSITNHNQIKKITLQELENVTKHEL
EDFVLHERLRLESKCGSNTHTSALNRTIAAIKSLYNYLCEQTEDEHGNTYMTRNVSRLIHIRKKSETLHYRAAQLEGKLF
LGDETKAFLEFVEHNYENSISNRARTSFKKNKIRDLAILSLFLSSGLRCAELVGINLHDLNLETGKVNVMRKEGKKDVVP
IAQFSHKYINNYFVTRSSIDTEIQAFFITDYDQKIRKISNASINKLVAKYSEAYKVRVTPHTLRHTFATRLYNVSHSQVL
VSNQLGHSSTKPTELYTHIVSAEAKDALSKL

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=46091 LILO_RS05860 WP_015426414.1 1210918..1211973(-) (xerS) [Lactococcus lactis subsp. lactis IO-1]
ATGTCAGAAAACCATGGTTATCAATACAATGTTAATAAACTAATGCTAGAATTTCCAAATTATGTTAACGAATATATTCA
ATCGAAAAGAGTTGTTCCGCTGAGTGAAGCGTCAATATATGAATATTGCTTAGACTTTAGAAAGTACCTCCAGTGGCTCA
TTGATGGTAGTATAACAAATCATAATCAAATCAAAAAAATTACCTTGCAAGAATTGGAAAATGTTACCAAACATGAATTG
GAGGACTTTGTGTTACATGAGAGACTACGTTTGGAATCTAAATGTGGGTCAAATACACATACTTCAGCTTTAAATCGAAC
AATTGCAGCGATTAAGAGCTTATATAACTATTTATGTGAGCAAACTGAAGATGAACATGGAAATACATACATGACCAGAA
ATGTCAGTCGTTTAATTCATATCCGAAAAAAAAGCGAGACCTTGCATTACCGTGCGGCTCAACTGGAAGGTAAACTATTC
CTTGGAGACGAAACCAAAGCCTTTTTAGAATTTGTTGAACATAACTATGAAAACTCTATCAGTAACCGTGCGAGAACAAG
TTTTAAGAAAAATAAAATCAGAGATTTAGCTATATTAAGTCTTTTTTTATCTTCTGGATTACGTTGTGCGGAACTTGTAG
GGATCAATCTACACGATTTAAACCTTGAAACTGGGAAAGTAAATGTGATGAGAAAAGAGGGAAAAAAAGACGTTGTCCCG
ATTGCCCAGTTTTCACACAAATATATAAATAATTATTTTGTGACAAGAAGTAGCATAGATACTGAGATACAAGCCTTTTT
CATAACAGATTACGACCAAAAAATAAGAAAAATCTCTAACGCTTCAATAAATAAGCTAGTGGCGAAGTATTCAGAAGCCT
ATAAAGTTCGTGTGACACCACATACACTAAGACATACATTCGCAACGAGGCTCTATAATGTCAGTCACTCTCAAGTTCTT
GTCAGCAATCAATTAGGGCATTCATCAACTAAACCTACAGAACTATATACCCACATTGTCAGTGCTGAAGCTAAAGATGC
ATTAAGCAAGTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(178-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

45.455

100

0.456

Multiple sequence alignment