Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   JM964_RS05555 Genome accession   NZ_CP068708
Coordinates   1145347..1146726 (-) Length   459 a.a.
NCBI ID   WP_024401460.1    Uniprot ID   -
Organism   Streptococcus suis strain ID33329     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1140347..1151726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM964_RS05530 (JM964_05530) - 1140602..1141879 (-) 1278 WP_044680727.1 pyrimidine-nucleoside phosphorylase -
  JM964_RS05535 (JM964_05535) - 1141876..1142466 (-) 591 WP_024376492.1 class I SAM-dependent methyltransferase -
  JM964_RS05540 (JM964_05540) coaA 1142575..1143495 (+) 921 WP_024410470.1 type I pantothenate kinase -
  JM964_RS05545 (JM964_05545) rpsT 1143554..1143802 (+) 249 WP_012027069.1 30S ribosomal protein S20 -
  JM964_RS05550 (JM964_05550) - 1144017..1145246 (-) 1230 WP_024401459.1 transglutaminase domain-containing protein -
  JM964_RS05555 (JM964_05555) ciaH 1145347..1146726 (-) 1380 WP_024401460.1 sensor histidine kinase Regulator
  JM964_RS05560 (JM964_05560) ciaR 1146719..1147390 (-) 672 WP_014637852.1 response regulator transcription factor Regulator
  JM964_RS05565 (JM964_05565) - 1147584..1147964 (-) 381 WP_024401461.1 hypothetical protein -
  JM964_RS05570 (JM964_05570) phoU 1148130..1148786 (-) 657 WP_002937611.1 phosphate signaling complex protein PhoU -
  JM964_RS05575 (JM964_05575) pstB 1148815..1149573 (-) 759 WP_002937614.1 phosphate ABC transporter ATP-binding protein PstB -
  JM964_RS05580 (JM964_05580) pstB 1149585..1150388 (-) 804 WP_002937615.1 phosphate ABC transporter ATP-binding protein PstB -
  JM964_RS05585 (JM964_05585) pstA 1150413..1151300 (-) 888 WP_002937616.1 phosphate ABC transporter permease PstA -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 51862.42 Da        Isoelectric Point: 5.8702

>NTDB_id=460893 JM964_RS05555 WP_024401460.1 1145347..1146726(-) (ciaH) [Streptococcus suis strain ID33329]
MPKRIGKLVYTDKFSFFIRYFAVFTLIFGLMTAIIFQLMRSTMYQNSDNTLKRIKEEPAMAVGFAIARTYEPNSVFILQD
SPTSEETTSSSSDSMPVPKDQKNTRDGDQLRLGVNTHVLLYSKSGEMVNPDTFTGLADLPLDKEKLGEIKETTVESSFGM
SEDYRYVTIELATDELGYYSSYDIKYATILVNVSQIKSSIETYESTVAIVMVSAWLISILASIYLSNLSMRPILISYQKQ
KDFVENASHELRTPLAVLQNRLESLFRHPEATILESSESIGSSLEEVRNMRLLTTNLLNLARRDDGLKVDMIDVQPNYFD
EIFANYLMIAEENGKTLTVNNLIHQPIRTDKVLIKQLLTILFDNAMKYTDDDGRIQITANIKDKSVYFTVADNGLGISDA
DKKKIFDRFYRVDKARTRQKGGFGLGLSLAQQIIKTLGGKISVRDNQPKGTIFEVGLPK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=460893 JM964_RS05555 WP_024401460.1 1145347..1146726(-) (ciaH) [Streptococcus suis strain ID33329]
ATGCCTAAGCGAATCGGAAAATTAGTGTATACGGATAAATTTTCCTTCTTTATCCGTTATTTTGCAGTATTTACCCTGAT
TTTTGGCTTGATGACAGCTATCATTTTTCAATTAATGCGTTCAACTATGTATCAAAATTCAGATAATACCTTGAAACGGA
TTAAGGAAGAACCAGCGATGGCTGTTGGTTTTGCGATCGCAAGAACCTATGAGCCCAACTCTGTCTTTATACTTCAAGAT
AGCCCAACTAGTGAAGAAACGACGAGCTCTAGCTCAGATAGCATGCCTGTTCCTAAAGATCAAAAAAATACTAGAGATGG
AGATCAGCTGAGATTAGGTGTCAATACTCATGTCTTACTCTATAGTAAAAGTGGAGAAATGGTCAATCCGGATACTTTTA
CTGGTTTGGCCGACCTACCGTTAGATAAGGAAAAATTGGGCGAAATTAAGGAAACAACGGTTGAATCAAGCTTCGGTATG
TCTGAAGATTATCGCTATGTGACGATTGAGCTTGCTACAGATGAACTAGGTTATTATTCGTCCTATGATATAAAATATGC
GACAATTTTAGTGAATGTCAGCCAAATAAAATCCTCCATTGAGACCTATGAATCGACAGTTGCTATTGTTATGGTATCAG
CTTGGCTCATTTCTATCTTGGCCAGTATTTACCTATCAAATCTTAGCATGCGTCCAATTCTAATCAGTTATCAAAAGCAA
AAAGACTTTGTTGAAAATGCTAGTCATGAGTTACGTACGCCGTTGGCTGTTCTCCAAAATCGCTTGGAGAGCCTGTTTCG
CCATCCCGAAGCGACGATTTTAGAGAGTAGTGAAAGTATCGGATCTAGTTTAGAAGAAGTCCGAAATATGCGATTATTGA
CAACGAACCTGCTCAATTTGGCTCGTCGTGATGATGGCTTAAAAGTCGATATGATCGATGTCCAACCCAACTATTTTGAT
GAAATCTTTGCTAATTACCTTATGATTGCCGAAGAAAATGGAAAAACACTGACAGTTAATAATTTGATTCATCAGCCGAT
TCGAACAGACAAGGTCCTTATTAAACAGTTGCTTACCATTTTATTTGACAATGCCATGAAGTATACCGATGATGATGGCA
GAATTCAAATTACAGCTAATATCAAGGATAAATCTGTCTACTTCACAGTTGCCGACAATGGTTTGGGAATCAGCGATGCC
GATAAGAAGAAAATCTTTGATCGCTTTTATCGAGTTGATAAGGCCAGAACGCGTCAAAAAGGTGGTTTCGGTCTAGGATT
ATCGCTGGCTCAGCAAATTATTAAGACACTAGGTGGGAAAATCTCTGTTAGAGATAACCAACCGAAAGGAACTATTTTTG
AGGTAGGATTACCTAAATAA

Domains

Predicted by InterProScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(240-306)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(350-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus pneumoniae Rx1

49.46

100

0.499
  ciaH Streptococcus pneumoniae D39

49.46

100

0.499
  ciaH Streptococcus pneumoniae R6

49.46

100

0.499
  ciaH Streptococcus pneumoniae TIGR4

49.46

100

0.499
  ciaH Streptococcus mutans UA159

50.336

97.386

0.49