Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV078_RS21930 Genome accession   NZ_CP056852
Coordinates   4616955..4617479 (-) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter freundii strain RHBSTW-00119     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4611955..4622479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV078_RS21910 (HV078_21910) soxR 4613597..4614055 (-) 459 WP_003031733.1 redox-sensitive transcriptional activator SoxR -
  HV078_RS21915 (HV078_21915) soxS 4614142..4614465 (+) 324 WP_003031731.1 superoxide response transcriptional regulator SoxS -
  HV078_RS21920 (HV078_21920) - 4614468..4616054 (-) 1587 WP_032948325.1 EAL domain-containing protein -
  HV078_RS21925 (HV078_21925) - 4616607..4616888 (+) 282 WP_032948324.1 YjcB family protein -
  HV078_RS21930 (HV078_21930) ssb 4616955..4617479 (-) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HV078_RS21935 (HV078_21935) uvrA 4617731..4620553 (+) 2823 WP_003031720.1 excinuclease ABC subunit UvrA -
  HV078_RS21940 (HV078_21940) - 4620669..4621025 (-) 357 WP_003031719.1 MmcQ/YjbR family DNA-binding protein -
  HV078_RS21945 (HV078_21945) aphA 4621153..4621866 (-) 714 WP_032948323.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=460850 HV078_RS21930 WP_003826621.1 4616955..4617479(-) (ssb) [Citrobacter freundii strain RHBSTW-00119]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=460850 HV078_RS21930 WP_003826621.1 4616955..4617479(-) (ssb) [Citrobacter freundii strain RHBSTW-00119]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAAGTTGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGCGGTGGTGCTCCGGCAGGTGGCGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAATCTCGTCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5