Detailed information NTG0046083

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: LILO_RS04970
• Genome accession: NC_020450
• Coordinates: 1021192..1021872 (+)
• Length: 226 a.a.
• NCBI ID: WP_015426270.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis IO-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1016192..1026872

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LILO_RS04950 (lilo_0944)	-	1016565..1017071 (+)	507	WP_225513343.1	DUF2127 domain-containing protein	-
LILO_RS04955 (lilo_0945)	-	1017075..1018400 (+)	1326	WP_015426267.1	sensor histidine kinase	-
LILO_RS04960 (lilo_0946)	-	1018407..1019063 (+)	657	WP_015426268.1	phosphatase PAP2 family protein	-
LILO_RS04965 (lilo_0947)	glmS	1019244..1021061 (+)	1818	WP_015426269.1	glutamine--fructose-6-phosphate transaminase (isomerizing)	-
LILO_RS04970 (lilo_0948)	radC	1021192..1021872 (+)	681	WP_015426270.1	RadC family protein	Machinery gene
LILO_RS11730	-	1021969..1023211 (+)	1243	Protein_963	LysM peptidoglycan-binding domain-containing protein	-
LILO_RS04980	-	1023315..1023590 (+)	276	WP_042230262.1	DUF2089 family protein	-
LILO_RS04985 (lilo_0952)	-	1023583..1023876 (+)	294	WP_015426274.1	hypothetical protein	-
LILO_RS04990 (lilo_0953)	-	1023957..1024382 (+)	426	WP_015426275.1	DUF1761 domain-containing protein	-
LILO_RS04995	-	1024509..1024712 (+)	204	WP_042230264.1	hypothetical protein	-
LILO_RS11955 (lilo_0954)	-	1024690..1024965 (+)	276	WP_136122459.1	DUF6978 family protein	-
LILO_RS05000 (lilo_0955)	-	1025100..1025495 (+)	396	WP_015426277.1	DUF1828 domain-containing protein	-
LILO_RS05005 (lilo_0956)	-	1025501..1025758 (+)	258	WP_015426278.1	hypothetical protein	-
LILO_RS05010 (lilo_0958)	-	1026285..1026791 (+)	507	WP_015426280.1	SAG1386/EF1546 family surface-associated protein	-

Sequence

Protein

• Length: 226 a.a.
• Molecular weight: 25824.62 Da
• Isoelectric Point: 7.1184

>NTDB_id=46083 LILO_RS04970 WP_015426270.1 1021192..1021872(+) (radC) [Lactococcus lactis subsp. lactis IO-1]
MYELRENPYPMQPRERLEFLGEECLSDVELLAILLRTGTKKYSSLNLALEILQHFETLDNLRKASINELREISGIGLAKS
IEIRAMIEFGKRIQTTNRKRYGQVLSSKEYGLSLAFEMQNFEQEHLVATYLDGQNRIIEKKTIFIGAVNHATASPREILY
HAIKNLSVGLLVAHNHPSGNLQPSQADKIFTDKIKKSCEDVGINFIDHIIVGAGNYFSFREEEIRK

Nucleotide

• Length: 681 bp

>NTDB_id=46083 LILO_RS04970 WP_015426270.1 1021192..1021872(+) (radC) [Lactococcus lactis subsp. lactis IO-1]
ATGTATGAACTAAGAGAAAATCCGTATCCGATGCAACCTAGGGAACGCTTAGAATTTTTAGGAGAAGAGTGCTTGTCTGA
TGTTGAGCTGTTAGCGATATTATTGCGAACAGGGACAAAAAAATACTCATCATTAAATTTGGCCTTGGAAATTCTTCAAC
ATTTTGAAACTTTGGATAATTTGCGTAAAGCTTCGATTAATGAACTCAGAGAAATTTCAGGCATTGGGCTGGCAAAATCC
ATTGAAATTCGAGCAATGATTGAATTTGGAAAAAGGATACAAACCACTAATAGAAAACGTTACGGTCAAGTTTTGAGTTC
CAAAGAATATGGCCTGAGTCTTGCTTTTGAAATGCAAAATTTTGAGCAAGAACATCTTGTGGCAACATATTTAGATGGTC
AAAATAGAATTATTGAGAAAAAGACAATTTTTATAGGGGCGGTTAATCATGCAACTGCAAGTCCTAGGGAGATTCTTTAT
CATGCAATAAAAAATCTCTCAGTAGGACTCTTAGTTGCACATAATCATCCCTCAGGAAATTTACAACCAAGTCAGGCTGA
TAAAATATTTACTGACAAAATAAAAAAATCTTGTGAGGATGTGGGGATCAATTTTATTGACCATATTATTGTAGGGGCTG
GTAATTATTTTAGTTTTCGGGAAGAAGAGATCAGAAAATGA

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (8-80)

• RadC-like JAB domain (RadC) (115-223)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Streptococcus pneumoniae TIGR4	45.946	98.23	0.451
radC	Streptococcus pneumoniae R6	45.946	98.23	0.451
radC	Streptococcus pneumoniae D39	45.946	98.23	0.451
radC	Streptococcus gordonii str. Challis substr. CH1	45.045	98.23	0.442
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	40.09	98.23	0.394