Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV083_RS21500 Genome accession   NZ_CP056839
Coordinates   4481066..4481590 (-) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter freundii strain RHBSTW-00126     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 4467309..4481590 4481066..4481590 within 0


Gene organization within MGE regions


Location: 4467309..4481590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV083_RS21445 (HV083_21450) - 4467309..4468895 (-) 1587 WP_048220046.1 EAL domain-containing protein -
  HV083_RS21450 (HV083_21455) - 4469447..4469728 (+) 282 WP_044715249.1 YjcB family protein -
  HV083_RS21455 (HV083_21460) - 4469813..4472122 (-) 2310 WP_048220044.1 autotransporter outer membrane beta-barrel domain-containing protein -
  HV083_RS21460 (HV083_21465) - 4472982..4473626 (-) 645 WP_181621216.1 AAA family ATPase -
  HV083_RS21470 (HV083_21475) - 4474871..4475557 (-) 687 WP_249418514.1 hypothetical protein -
  HV083_RS21475 (HV083_21480) - 4475595..4476274 (+) 680 Protein_4220 IS3 family transposase -
  HV083_RS21480 (HV083_21485) ltrA 4476947..4478455 (+) 1509 WP_047358972.1 group II intron reverse transcriptase/maturase -
  HV083_RS21485 (HV083_21490) - 4478536..4479012 (+) 477 Protein_4222 IS3 family transposase -
  HV083_RS21490 (HV083_21495) - 4479009..4479671 (-) 663 WP_249418515.1 hypothetical protein -
  HV083_RS21495 (HV083_21500) - 4479661..4480908 (-) 1248 WP_032142157.1 site-specific integrase -
  HV083_RS21500 (HV083_21505) ssb 4481066..4481590 (-) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=460805 HV083_RS21500 WP_003826621.1 4481066..4481590(-) (ssb) [Citrobacter freundii strain RHBSTW-00126]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=460805 HV083_RS21500 WP_003826621.1 4481066..4481590(-) (ssb) [Citrobacter freundii strain RHBSTW-00126]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAAGTTGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGCGGTGGTGCTCCGGCAGGTGGCGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGTGCGCAGTCTCGTCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGATTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5