Detailed information NTG0460773

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: HV084_RS16795
• Genome accession: NZ_CP056834
• Coordinates: 3445718..3446179 (+)
• Length: 153 a.a.
• NCBI ID: WP_181640772.1
• Uniprot ID: -
• Organism: Citrobacter sp. RHBSTW-00127
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 3440718..3451179

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HV084_RS16745 (HV084_16765)	-	3441098..3441409 (-)	312	WP_181640765.1	hypothetical protein	-
HV084_RS16750 (HV084_16770)	-	3441422..3441646 (-)	225	WP_249418464.1	hypothetical protein	-
HV084_RS16755 (HV084_16775)	-	3441983..3442255 (+)	273	WP_181640766.1	antitermination protein N	-
HV084_RS16760 (HV084_16780)	-	3442276..3442539 (+)	264	WP_181640767.1	hypothetical protein	-
HV084_RS16765 (HV084_16785)	-	3442583..3442879 (+)	297	WP_181640768.1	regulator	-
HV084_RS16770 (HV084_16790)	-	3443023..3443277 (+)	255	WP_249418465.1	hypothetical protein	-
HV084_RS16775 (HV084_16795)	-	3443274..3443432 (+)	159	WP_181640769.1	hypothetical protein	-
HV084_RS16780 (HV084_16800)	-	3443429..3443638 (+)	210	WP_181640770.1	cell division protein FtsZ	-
HV084_RS16785 (HV084_16805)	-	3443714..3444904 (+)	1191	WP_249418466.1	hypothetical protein	-
HV084_RS16790 (HV084_16810)	-	3445109..3445717 (+)	609	WP_181640771.1	ERF family protein	-
HV084_RS16795 (HV084_16815)	ssb	3445718..3446179 (+)	462	WP_181640772.1	single-stranded DNA-binding protein	Machinery gene
HV084_RS16800 (HV084_16820)	-	3446234..3446518 (+)	285	WP_181640773.1	hypothetical protein	-
HV084_RS16805 (HV084_16825)	-	3446511..3447062 (+)	552	WP_181640774.1	phage N-6-adenine-methyltransferase	-
HV084_RS16810 (HV084_16830)	-	3447059..3447277 (+)	219	WP_181640775.1	hypothetical protein	-
HV084_RS16815 (HV084_16835)	-	3447274..3448024 (+)	751	Protein_3313	hypothetical protein	-
HV084_RS16820 (HV084_16840)	-	3448183..3448350 (+)	168	WP_249418475.1	TraR/DksA C4-type zinc finger protein	-
HV084_RS16825 (HV084_16845)	-	3448350..3448574 (+)	225	WP_181640777.1	hypothetical protein	-
HV084_RS16830 (HV084_16850)	-	3448574..3448981 (+)	408	WP_181640778.1	phage protein NinX family protein	-
HV084_RS16840 (HV084_16860)	-	3449624..3449875 (+)	252	WP_181640780.1	DUF4222 domain-containing protein	-
HV084_RS16845 (HV084_16865)	-	3449885..3450157 (+)	273	WP_181640781.1	hypothetical protein	-
HV084_RS16850 (HV084_16870)	-	3450293..3450493 (+)	201	WP_023294204.1	transcriptional regulator	-

Sequence

Protein

• Length: 153 a.a.
• Molecular weight: 16897.05 Da
• Isoelectric Point: 7.2031

>NTDB_id=460773 HV084_RS16795 WP_181640772.1 3445718..3446179(+) (ssb) [Citrobacter sp. RHBSTW-00127]
MASRGVNKVILVGNLGQDPEVRYLPNSGAVANITLATSESWRDKATGEMKEQAEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGKQAEGKPAGNSQQPPRTQQQPVQQHNEPPMDFLGDIPF

Nucleotide

• Length: 462 bp

>NTDB_id=460773 HV084_RS16795 WP_181640772.1 3445718..3446179(+) (ssb) [Citrobacter sp. RHBSTW-00127]
ATGGCAAGCAGAGGCGTAAATAAAGTGATCCTCGTCGGCAACCTTGGGCAAGACCCTGAAGTTCGCTATCTACCAAATAG
TGGCGCGGTAGCTAATATCACATTGGCAACTTCGGAATCATGGCGGGATAAAGCAACTGGCGAGATGAAAGAGCAGGCCG
AATGGCACCGGGTGGTGCTGTTTGGCAAACTGGCGGAAGTCGCCAGCGAATATCTTCGAAAAGGTTCTCAGGTGTATATC
GAAGGCCAGCTCCGCACACGGAAATGGACAGACCAATCTGGTGTCGAGAAGTACACGACTGAAGTTGTTGTGAACGTCGG
CGGCACCATGCAAATGCTTGGCGGGAAGCAAGCAGAAGGTAAACCGGCAGGTAATAGCCAGCAACCACCACGGACGCAGC
AGCAACCGGTACAGCAGCACAACGAACCGCCTATGGATTTCCTGGGTGACATTCCGTTTTAA

Domains

Predicted by InterProScan.

• Single-strand binding protein family (SSB) (6-112)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	65.73	100	0.765
ssb	Glaesserella parasuis strain SC1401	47.253	100	0.562
ssb	Neisseria meningitidis MC58	44.218	96.078	0.425
ssb	Neisseria gonorrhoeae MS11	44.218	96.078	0.425