Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV103_RS22380 Genome accession   NZ_CP056809
Coordinates   4682374..4682898 (-) Length   174 a.a.
NCBI ID   WP_046671365.1    Uniprot ID   -
Organism   Citrobacter freundii strain RHBSTW-00162     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4677374..4687898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV103_RS22370 (HV103_22375) - 4679218..4679499 (+) 282 WP_003844730.1 YjcB family protein -
  HV103_RS22375 (HV103_22380) - 4679583..4681892 (-) 2310 WP_046671366.1 autotransporter outer membrane beta-barrel domain-containing protein -
  HV103_RS22380 (HV103_22385) ssb 4682374..4682898 (-) 525 WP_046671365.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HV103_RS22385 (HV103_22390) uvrA 4683150..4685972 (+) 2823 WP_046671364.1 excinuclease ABC subunit UvrA -
  HV103_RS22390 (HV103_22395) - 4686088..4686444 (-) 357 WP_003031719.1 MmcQ/YjbR family DNA-binding protein -
  HV103_RS22395 (HV103_22400) aphA 4686572..4687285 (-) 714 WP_003826615.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18607.63 Da        Isoelectric Point: 5.2456

>NTDB_id=460688 HV103_RS22380 WP_046671365.1 4682374..4682898(-) (ssb) [Citrobacter freundii strain RHBSTW-00162]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGGQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=460688 HV103_RS22380 WP_046671365.1 4682374..4682898(-) (ssb) [Citrobacter freundii strain RHBSTW-00162]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAGGTTGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGCGGTGGTGCTCCGGCAGGTGGCGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGGGCAGTCTCGTCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.045

100

0.494
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.494