Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HWI92_RS15620 Genome accession   NZ_CP056775
Coordinates   3886128..3886592 (-) Length   154 a.a.
NCBI ID   WP_204656960.1    Uniprot ID   -
Organism   Dyadobacter sandarakinus strain Q3-56     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3881128..3891592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWI92_RS15600 (HWI92_15595) - 3881460..3882254 (+) 795 WP_204656941.1 phosphosulfolactate synthase -
  HWI92_RS15605 (HWI92_15600) - 3882300..3882953 (+) 654 WP_204656943.1 DedA family protein -
  HWI92_RS15610 (HWI92_15605) guaB 3883109..3884584 (-) 1476 WP_204656951.1 IMP dehydrogenase -
  HWI92_RS15615 (HWI92_15610) - 3884662..3885897 (-) 1236 WP_229248102.1 transporter associated domain-containing protein -
  HWI92_RS15620 (HWI92_15615) ssb 3886128..3886592 (-) 465 WP_204656960.1 single-stranded DNA-binding protein Machinery gene
  HWI92_RS15625 (HWI92_15620) mutY 3886728..3887813 (-) 1086 WP_204656962.1 A/G-specific adenine glycosylase -
  HWI92_RS15630 (HWI92_15625) - 3887973..3888278 (+) 306 WP_204656964.1 HU family DNA-binding protein -
  HWI92_RS15635 (HWI92_15630) - 3888306..3889148 (+) 843 WP_204656966.1 tetratricopeptide repeat protein -
  HWI92_RS15640 (HWI92_15635) - 3889409..3890971 (+) 1563 WP_204656968.1 Rne/Rng family ribonuclease -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16677.40 Da        Isoelectric Point: 4.9658

>NTDB_id=460565 HWI92_RS15620 WP_204656960.1 3886128..3886592(-) (ssb) [Dyadobacter sandarakinus strain Q3-56]
MAGSVNKVILIGNLGSDPEVRYLESGSAVAKFNIATTESYTNKNGERVENTEWHRIELWEGLAKVAEKYLKKGNQVYIEG
RIRTDNWTDKDGQQKTGVTIRANSMTLLGGPSGNTGGDTGQGYAQSAPQRGQAPRQPDPIPPSLAGNDDDDLPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=460565 HWI92_RS15620 WP_204656960.1 3886128..3886592(-) (ssb) [Dyadobacter sandarakinus strain Q3-56]
ATGGCAGGAAGTGTTAACAAAGTAATCCTGATTGGAAACCTGGGCAGTGACCCGGAGGTGCGTTACCTGGAAAGCGGCTC
AGCCGTGGCTAAGTTTAATATTGCTACCACCGAGAGCTATACCAACAAAAATGGTGAACGTGTGGAAAATACGGAGTGGC
ACCGCATTGAACTTTGGGAAGGTTTGGCAAAAGTTGCTGAAAAGTACCTTAAAAAAGGCAATCAGGTGTACATAGAAGGA
CGCATCCGGACAGACAACTGGACAGATAAGGACGGGCAGCAAAAAACCGGGGTCACGATCCGTGCCAATAGTATGACGCT
GCTGGGAGGACCTTCGGGCAATACGGGCGGTGACACTGGACAAGGTTATGCACAGTCTGCACCTCAGCGCGGGCAGGCAC
CCAGGCAACCGGACCCGATTCCACCGTCGCTCGCCGGAAATGACGATGATGATCTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

46.243

100

0.519
  ssb Neisseria meningitidis MC58

45.665

100

0.513
  ssb Vibrio cholerae strain A1552

43.258

100

0.5
  ssb Glaesserella parasuis strain SC1401

40.331

100

0.474