Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HWH54_RS02975 Genome accession   NZ_CP056772
Coordinates   609399..609902 (-) Length   167 a.a.
NCBI ID   WP_158346806.1    Uniprot ID   A0A5J6ZDH7
Organism   Buchnera aphidicola (Aphis gossypii) strain KR     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 604399..614902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWH54_RS02955 (HWH54_02950) - 605012..606598 (-) 1587 WP_248594308.1 peptide chain release factor 3 -
  HWH54_RS02960 (HWH54_02955) ansA 606783..607808 (+) 1026 WP_248594309.1 asparaginase -
  HWH54_RS02965 (HWH54_02960) - 607844..608419 (-) 576 WP_158346802.1 NfuA family Fe-S biogenesis protein -
  HWH54_RS02970 (HWH54_02965) bioH 608550..609326 (+) 777 WP_158346804.1 pimeloyl-ACP methyl ester esterase BioH -
  HWH54_RS02975 (HWH54_02970) ssb 609399..609902 (-) 504 WP_158346806.1 single-stranded DNA-binding protein Machinery gene
  HWH54_RS02980 (HWH54_02975) dnaB 610696..612093 (+) 1398 WP_158346808.1 replicative DNA helicase -
  HWH54_RS02985 (HWH54_02980) gshB 612174..613133 (+) 960 WP_248594310.1 glutathione synthase -
  HWH54_RS02990 (HWH54_02985) ruvX 613144..613554 (+) 411 WP_158346812.1 Holliday junction resolvase RuvX -
  HWH54_RS02995 (HWH54_02990) - 613581..614255 (+) 675 WP_248594311.1 YggS family pyridoxal phosphate-dependent enzyme -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 19069.26 Da        Isoelectric Point: 5.7408

>NTDB_id=460528 HWH54_RS02975 WP_158346806.1 609399..609902(-) (ssb) [Buchnera aphidicola (Aphis gossypii) strain KR]
MASRGVNKAILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGENKEKTEWHRVVLFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWQDQNGFDRYTTEIIVNIGGTMQMLGNRNSNSYNTNENNNILKTKNTETTEISKDLDKHKLKQEQMNSPDID
FDDEIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=460528 HWH54_RS02975 WP_158346806.1 609399..609902(-) (ssb) [Buchnera aphidicola (Aphis gossypii) strain KR]
ATGGCAAGTCGAGGTGTAAACAAGGCAATTTTAATCGGTCACTTAGGTCAAGATCCAGAAGTACGATATATGCCCAATGG
TAATGCAGTAGTAAATATGACACTTGCAACTTCAGAAAATTGGAAAGATAAAAATACAGGTGAAAATAAAGAAAAAACAG
AGTGGCATAGAGTGGTTTTATTTGGAAAATTAGCTGAAATAGCTGGAGAATATTTACGAAAAGGTTCACAAGTGTATATT
GAAGGTTCTCTTCAAACAAGAAAATGGCAAGACCAAAATGGTTTTGATCGATATACAACAGAAATCATAGTAAATATTGG
TGGCACAATGCAAATGCTCGGAAACCGAAATTCTAATTCTTATAATACAAATGAAAATAATAATATTTTAAAAACAAAAA
ACACAGAAACCACTGAAATATCTAAAGATCTAGATAAACATAAATTAAAACAGGAGCAAATGAATTCTCCAGATATAGAT
TTTGATGATGAAATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6ZDH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.192

100

0.617
  ssb Glaesserella parasuis strain SC1401

47.253

100

0.515
  ssb Neisseria gonorrhoeae MS11

42.045

100

0.443
  ssb Neisseria meningitidis MC58

42.045

100

0.443