Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HU701_RS02965 Genome accession   NZ_CP056771
Coordinates   609396..609899 (-) Length   167 a.a.
NCBI ID   WP_178919430.1    Uniprot ID   -
Organism   Buchnera aphidicola (Aphis gossypii) strain PASI     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 604396..614899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU701_RS02945 - 605010..606596 (-) 1587 WP_178919424.1 peptide chain release factor 3 -
  HU701_RS02950 ansA 606762..607805 (+) 1044 WP_178919426.1 asparaginase -
  HU701_RS02955 - 607841..608416 (-) 576 WP_178919428.1 NfuA family Fe-S biogenesis protein -
  HU701_RS02960 bioH 608547..609323 (+) 777 WP_158346804.1 pimeloyl-ACP methyl ester esterase BioH -
  HU701_RS02965 ssb 609396..609899 (-) 504 WP_178919430.1 single-stranded DNA-binding protein Machinery gene
  HU701_RS02970 dnaB 610693..612090 (+) 1398 WP_158346808.1 replicative DNA helicase -
  HU701_RS02975 gshB 612171..613130 (+) 960 WP_178919432.1 glutathione synthase -
  HU701_RS02980 ruvX 613141..613551 (+) 411 WP_158346812.1 Holliday junction resolvase RuvX -
  HU701_RS02985 - 613578..614252 (+) 675 WP_178919434.1 YggS family pyridoxal phosphate-dependent enzyme -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 19046.23 Da        Isoelectric Point: 5.3376

>NTDB_id=460520 HU701_RS02965 WP_178919430.1 609396..609899(-) (ssb) [Buchnera aphidicola (Aphis gossypii) strain PASI]
MASRGVNKAILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGENKEKTEWHRVVLFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWQDQNGFDRYTTEIIVNIGGTMQMLGNRNSNSYNTNENNNILKTKNTETTEISKDLDKNKLKQEQMNSPDID
FDDEIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=460520 HU701_RS02965 WP_178919430.1 609396..609899(-) (ssb) [Buchnera aphidicola (Aphis gossypii) strain PASI]
ATGGCAAGTCGAGGTGTAAACAAGGCAATTTTAATCGGTCACTTAGGTCAAGATCCAGAAGTACGATATATGCCCAATGG
TAATGCAGTAGTAAATATGACACTTGCAACTTCAGAAAATTGGAAAGATAAAAATACAGGTGAAAATAAAGAAAAAACAG
AGTGGCATAGAGTGGTTTTATTTGGAAAATTAGCTGAAATAGCTGGAGAATATTTACGAAAAGGTTCACAAGTGTATATT
GAAGGTTCTCTTCAAACAAGAAAATGGCAAGACCAAAATGGTTTTGATCGATATACAACAGAAATCATAGTAAATATTGG
TGGCACAATGCAAATGCTCGGAAACCGAAATTCTAATTCTTATAATACAAATGAAAATAATAATATTTTAAAAACAAAAA
ACACAGAAACCACTGAAATATCTAAAGATCTAGATAAAAATAAATTAAAACAGGAGCAAATGAATTCTCCAGATATAGAT
TTTGATGATGAAATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.627

100

0.611
  ssb Glaesserella parasuis strain SC1401

46.277

100

0.521
  ssb Neisseria meningitidis MC58

41.477

100

0.437
  ssb Neisseria gonorrhoeae MS11

41.477

100

0.437