Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HV236_RS05560 | Genome accession | NZ_CP056707 |
| Coordinates | 1155910..1156404 (-) | Length | 164 a.a. |
| NCBI ID | WP_063153802.1 | Uniprot ID | - |
| Organism | Enterobacter hormaechei strain RHBSTW-00564 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1149370..1208008 | 1155910..1156404 | within | 0 |
Gene organization within MGE regions
Location: 1149370..1208008
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV236_RS23435 | - | 1149370..1150527 (-) | 1158 | WP_223831790.1 | site-specific integrase | - |
| HV236_RS05510 (HV236_05520) | - | 1150410..1150745 (-) | 336 | WP_071886183.1 | helix-turn-helix domain-containing protein | - |
| HV236_RS05515 (HV236_05525) | - | 1150852..1151154 (-) | 303 | WP_059290846.1 | hypothetical protein | - |
| HV236_RS05520 (HV236_05530) | - | 1151164..1151403 (-) | 240 | WP_063159396.1 | DUF4222 domain-containing protein | - |
| HV236_RS05525 (HV236_05535) | - | 1151366..1151953 (-) | 588 | WP_063159395.1 | hypothetical protein | - |
| HV236_RS05530 (HV236_05540) | - | 1151950..1152171 (-) | 222 | WP_053087062.1 | TraR/DksA family transcriptional regulator | - |
| HV236_RS05535 (HV236_05545) | - | 1152438..1152785 (-) | 348 | WP_023303576.1 | hypothetical protein | - |
| HV236_RS05540 (HV236_05550) | - | 1152782..1153000 (-) | 219 | WP_023300422.1 | hypothetical protein | - |
| HV236_RS05545 (HV236_05555) | - | 1153003..1155225 (-) | 2223 | WP_063159394.1 | Dam family site-specific DNA-(adenine-N6)-methyltransferase | - |
| HV236_RS05550 (HV236_05560) | - | 1155222..1155374 (-) | 153 | WP_063153804.1 | DUF1317 family protein | - |
| HV236_RS05555 (HV236_05565) | - | 1155374..1155703 (-) | 330 | WP_063153803.1 | hypothetical protein | - |
| HV236_RS05560 (HV236_05570) | ssb | 1155910..1156404 (-) | 495 | WP_063153802.1 | single-stranded DNA-binding protein | Machinery gene |
| HV236_RS05565 (HV236_05575) | - | 1156405..1157130 (-) | 726 | WP_063153801.1 | Rad52/Rad22 family DNA repair protein | - |
| HV236_RS05570 (HV236_05580) | - | 1157127..1157285 (-) | 159 | WP_159424631.1 | hypothetical protein | - |
| HV236_RS05575 (HV236_05585) | - | 1157282..1157479 (-) | 198 | WP_032667076.1 | hypothetical protein | - |
| HV236_RS05580 (HV236_05590) | - | 1157488..1158456 (-) | 969 | WP_181522261.1 | hypothetical protein | - |
| HV236_RS05585 (HV236_05595) | - | 1158525..1158665 (-) | 141 | WP_023327239.1 | host cell division inhibitory peptide Kil | - |
| HV236_RS05590 (HV236_05600) | - | 1158662..1158820 (-) | 159 | WP_063132389.1 | hypothetical protein | - |
| HV236_RS05600 (HV236_05610) | - | 1160231..1160398 (-) | 168 | WP_181522262.1 | hypothetical protein | - |
| HV236_RS05610 (HV236_05620) | - | 1162035..1162424 (+) | 390 | WP_181522281.1 | hypothetical protein | - |
| HV236_RS05615 (HV236_05625) | - | 1162815..1163246 (+) | 432 | WP_063153807.1 | recombination protein NinB | - |
| HV236_RS05620 (HV236_05630) | - | 1163239..1163820 (+) | 582 | WP_052687539.1 | NUMOD4 domain-containing protein | - |
| HV236_RS05625 (HV236_05635) | - | 1163820..1163990 (+) | 171 | WP_023296423.1 | NinE family protein | - |
| HV236_RS05630 (HV236_05640) | - | 1163983..1164624 (+) | 642 | WP_063863271.1 | recombination protein NinG | - |
| HV236_RS05640 (HV236_05650) | - | 1164824..1164940 (+) | 117 | WP_102046759.1 | hypothetical protein | - |
| HV236_RS05645 (HV236_05655) | - | 1164937..1165626 (+) | 690 | WP_063160440.1 | bacteriophage antitermination protein Q | - |
| HV236_RS05650 (HV236_05660) | - | 1166119..1166343 (+) | 225 | WP_023622516.1 | class II holin family protein | - |
| HV236_RS05655 (HV236_05665) | - | 1166321..1166815 (+) | 495 | WP_058689315.1 | lysozyme | - |
| HV236_RS05660 (HV236_05670) | - | 1166812..1167114 (+) | 303 | WP_058689314.1 | hypothetical protein | - |
| HV236_RS05665 (HV236_05675) | - | 1167111..1167572 (+) | 462 | WP_058689313.1 | lysis protein | - |
| HV236_RS05670 (HV236_05680) | - | 1167978..1168169 (+) | 192 | WP_063863319.1 | hypothetical protein | - |
| HV236_RS05675 (HV236_05685) | - | 1168188..1168703 (+) | 516 | WP_063159386.1 | hypothetical protein | - |
| HV236_RS05680 (HV236_05690) | - | 1168703..1170175 (+) | 1473 | WP_063159385.1 | hypothetical protein | - |
| HV236_RS05685 (HV236_05695) | - | 1170187..1171647 (+) | 1461 | WP_063159384.1 | phage portal protein | - |
| HV236_RS05690 (HV236_05700) | - | 1171601..1172584 (+) | 984 | WP_169815507.1 | phage minor head protein | - |
| HV236_RS05695 (HV236_05705) | - | 1172624..1173139 (+) | 516 | WP_053265478.1 | hypothetical protein | - |
| HV236_RS05700 (HV236_05710) | - | 1173209..1174594 (+) | 1386 | WP_063159382.1 | DUF2213 domain-containing protein | - |
| HV236_RS05705 (HV236_05715) | - | 1174598..1175038 (+) | 441 | WP_063159381.1 | hypothetical protein | - |
| HV236_RS05710 (HV236_05720) | - | 1175050..1176126 (+) | 1077 | WP_063159380.1 | major capsid protein | - |
| HV236_RS05715 (HV236_05725) | - | 1176137..1176538 (+) | 402 | WP_063159379.1 | hypothetical protein | - |
| HV236_RS05720 (HV236_05730) | - | 1176541..1176921 (+) | 381 | WP_057072451.1 | hypothetical protein | - |
| HV236_RS05725 (HV236_05735) | - | 1176921..1177094 (+) | 174 | WP_045911060.1 | hypothetical protein | - |
| HV236_RS05730 (HV236_05740) | - | 1177094..1177450 (+) | 357 | WP_023300379.1 | hypothetical protein | - |
| HV236_RS05735 (HV236_05745) | - | 1177453..1177917 (+) | 465 | WP_049024550.1 | hypothetical protein | - |
| HV236_RS05740 (HV236_05750) | - | 1177914..1178297 (+) | 384 | WP_032608745.1 | hypothetical protein | - |
| HV236_RS05745 (HV236_05755) | - | 1178361..1179104 (+) | 744 | WP_006808946.1 | Ig-like domain-containing protein | - |
| HV236_RS05750 (HV236_05760) | - | 1179162..1179833 (+) | 672 | WP_058685502.1 | DUF6246 family protein | - |
| HV236_RS05755 (HV236_05765) | - | 1179846..1182791 (+) | 2946 | WP_063159378.1 | tail protein (tape measure) | - |
| HV236_RS05760 (HV236_05770) | - | 1182791..1183288 (+) | 498 | WP_063159377.1 | hypothetical protein | - |
| HV236_RS05765 (HV236_05775) | - | 1183288..1183758 (+) | 471 | WP_048981791.1 | hypothetical protein | - |
| HV236_RS05770 (HV236_05780) | - | 1183772..1184137 (+) | 366 | WP_063159376.1 | NlpC/P60 family protein | - |
| HV236_RS05775 (HV236_05785) | - | 1184124..1186601 (+) | 2478 | WP_063159375.1 | host specificity factor TipJ family phage tail protein | - |
| HV236_RS23440 | - | 1186660..1189032 (+) | 2373 | WP_063159374.1 | SGNH/GDSL hydrolase family protein | - |
| HV236_RS05785 (HV236_05795) | - | 1189131..1190564 (-) | 1434 | WP_072051099.1 | glucosyltransferase domain-containing protein | - |
| HV236_RS05790 (HV236_05800) | - | 1190561..1191478 (-) | 918 | WP_045332447.1 | glycosyltransferase family 2 protein | - |
| HV236_RS05795 (HV236_05805) | - | 1191475..1191837 (-) | 363 | WP_045332444.1 | GtrA family protein | - |
| HV236_RS23370 | - | 1191951..1192316 (+) | 366 | WP_047722008.1 | S24 family peptidase | - |
| HV236_RS05800 (HV236_05810) | yahO | 1192791..1193066 (+) | 276 | WP_045334432.1 | DUF1471 family periplasmic protein YahO | - |
| HV236_RS05805 (HV236_05815) | - | 1193268..1195451 (+) | 2184 | WP_047052849.1 | TonB-dependent siderophore receptor | - |
| HV236_RS05810 (HV236_05820) | - | 1195579..1197552 (+) | 1974 | WP_047052851.1 | PhoX family phosphatase | - |
| HV236_RS05815 (HV236_05825) | pheP | 1197655..1199040 (+) | 1386 | WP_047052853.1 | phenylalanine transporter | - |
| HV236_RS05820 (HV236_05830) | - | 1199301..1200536 (+) | 1236 | WP_047052854.1 | MFS transporter | - |
| HV236_RS05825 (HV236_05835) | - | 1200552..1201577 (+) | 1026 | WP_047052856.1 | sugar phosphate isomerase/epimerase | - |
| HV236_RS05830 (HV236_05840) | - | 1201570..1202712 (+) | 1143 | WP_047052859.1 | Gfo/Idh/MocA family oxidoreductase | - |
| HV236_RS05835 (HV236_05845) | - | 1202788..1203759 (+) | 972 | WP_047052861.1 | LacI family DNA-binding transcriptional regulator | - |
| HV236_RS05840 (HV236_05850) | - | 1203760..1205004 (-) | 1245 | WP_022650531.1 | mechanosensitive ion channel family protein | - |
| HV236_RS05845 (HV236_05855) | - | 1205072..1206508 (-) | 1437 | WP_039271415.1 | MFS transporter | - |
| HV236_RS05850 (HV236_05860) | - | 1206616..1207485 (+) | 870 | WP_017382554.1 | helix-turn-helix transcriptional regulator | - |
| HV236_RS05855 (HV236_05870) | - | 1207721..1208008 (+) | 288 | WP_015571209.1 | helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 164 a.a. Molecular weight: 17468.46 Da Isoelectric Point: 5.7670
>NTDB_id=460253 HV236_RS05560 WP_063153802.1 1155910..1156404(-) (ssb) [Enterobacter hormaechei strain RHBSTW-00564]
MAKGINKVILVGNLGQDPEVRYLPSGGAVCSLTLATSESWRDKATGELKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYIE
GQLRTRKWTDQAGTEKYTTEVVVNVGGTMQMLGGRQGGGAAPAGGSPAQGGNQFSGGAQSRAQQHSTPAQSNEPPMDFDD
DIPF
MAKGINKVILVGNLGQDPEVRYLPSGGAVCSLTLATSESWRDKATGELKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYIE
GQLRTRKWTDQAGTEKYTTEVVVNVGGTMQMLGGRQGGGAAPAGGSPAQGGNQFSGGAQSRAQQHSTPAQSNEPPMDFDD
DIPF
Nucleotide
Download Length: 495 bp
>NTDB_id=460253 HV236_RS05560 WP_063153802.1 1155910..1156404(-) (ssb) [Enterobacter hormaechei strain RHBSTW-00564]
ATGGCAAAGGGCATCAACAAAGTGATCCTCGTCGGCAACCTCGGGCAAGACCCCGAGGTCCGTTATCTTCCCTCCGGCGG
CGCAGTGTGCAGCCTTACACTGGCGACATCGGAGTCATGGCGAGATAAAGCCACTGGCGAGCTCAAAGAGCAAACGGAAT
GGCACCGCGTCGTTCTGTTCGGAAAACTGGCAGAAGTGGCCGGTGAATACCTGCGCAAAGGTTCTCAGGTCTATATCGAG
GGGCAACTGCGCACCCGCAAATGGACAGATCAGGCAGGTACCGAGAAGTACACCACTGAGGTAGTGGTAAACGTCGGCGG
CACAATGCAGATGCTTGGTGGCCGTCAGGGCGGTGGAGCGGCACCGGCAGGTGGCAGCCCGGCGCAGGGCGGGAATCAGT
TCAGCGGCGGCGCACAGTCTCGCGCACAGCAGCACTCGACACCCGCCCAATCTAACGAACCGCCAATGGACTTCGACGAC
GATATACCTTTTTAA
ATGGCAAAGGGCATCAACAAAGTGATCCTCGTCGGCAACCTCGGGCAAGACCCCGAGGTCCGTTATCTTCCCTCCGGCGG
CGCAGTGTGCAGCCTTACACTGGCGACATCGGAGTCATGGCGAGATAAAGCCACTGGCGAGCTCAAAGAGCAAACGGAAT
GGCACCGCGTCGTTCTGTTCGGAAAACTGGCAGAAGTGGCCGGTGAATACCTGCGCAAAGGTTCTCAGGTCTATATCGAG
GGGCAACTGCGCACCCGCAAATGGACAGATCAGGCAGGTACCGAGAAGTACACCACTGAGGTAGTGGTAAACGTCGGCGG
CACAATGCAGATGCTTGGTGGCCGTCAGGGCGGTGGAGCGGCACCGGCAGGTGGCAGCCCGGCGCAGGGCGGGAATCAGT
TCAGCGGCGGCGCACAGTCTCGCGCACAGCAGCACTCGACACCCGCCCAATCTAACGAACCGCCAATGGACTTCGACGAC
GATATACCTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
67.045 |
100 |
0.72 |
| ssb | Glaesserella parasuis strain SC1401 |
53.591 |
100 |
0.591 |
| ssb | Neisseria meningitidis MC58 |
43.75 |
100 |
0.47 |
| ssb | Neisseria gonorrhoeae MS11 |
43.75 |
100 |
0.47 |